Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0328 |
Symbol | |
ID | 5200885 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 349720 |
End bp | 350538 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640579868 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001260837 |
Protein GI | 148553255 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0477123 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGAAC CCACCCGCTA TCTCGGCCGC CTGGCCGGCA AGGCCGCGAT CGTCACCGGC GCCGGAGCGG CGGAGGACGA GATCGGCATC GGCCGCGCCA TCGCCTATAT CATGGCGCGC GAGGGGGCGA AGGTCGCCTG CGCCGATCTC GACGGCGCGC GCGCCGAGGC GACCGCCGCG CAGATCCGCG CCGAGGGCGG CGAGGCGATC GCCGTCGCCG CCGACGTCAG CCTGCCCGAG GATTGCGAGG CGTTGGTAGA AACCACCGTC AAGACCTTTG GACAGCTCGA TATTCTGGTG AACAATGTCG GCATCTCGGT GCCGACCAAC CTGGAGTCGG TGACGCTCGA CCTGTGGAAC CGGACGATCG CCGTCAACCT GACCAGCGTC ATGCTGATGA GCAAATATGC GGTGCCGGTG ATGGCGGCGC GGGGCGGCGG ATCGATCGTC AACATCTCGT CGCTGGCTGG CATGCGGGCG ATGGGCGCGG TCGCCTATGG CCCCTCCAAG GCGGCGATGG CGCAGCTCTC GCGCGAGATC GGCGTGCTGC ACGGGCGGCA GGGCATCCGC GTCAACACGG TCGCGCCCGG CCATGTCATG ACCCCGCACG CGATGAGCAA GCTGCCCGCC AGCATGCGCG AGGCGCGCCG CAAGGTCGGC CCGCTCGGCG TCGAGGGCGA TGCGTGGGAC GTCGCCCAGG CGGTGCTGTT CATCGCCAGC GACGAGGCGC GCTTCATCAA CGGCGTCCAT CTCGCGGTCG ACGGCGGGGT CGAGGGGATC GGCCCGATGG TCGGCCACGC GTTGATCTCC GAGGCATGA
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Protein sequence | MPEPTRYLGR LAGKAAIVTG AGAAEDEIGI GRAIAYIMAR EGAKVACADL DGARAEATAA QIRAEGGEAI AVAADVSLPE DCEALVETTV KTFGQLDILV NNVGISVPTN LESVTLDLWN RTIAVNLTSV MLMSKYAVPV MAARGGGSIV NISSLAGMRA MGAVAYGPSK AAMAQLSREI GVLHGRQGIR VNTVAPGHVM TPHAMSKLPA SMREARRKVG PLGVEGDAWD VAQAVLFIAS DEARFINGVH LAVDGGVEGI GPMVGHALIS EA
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