Gene Swit_0328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0328 
Symbol 
ID5200885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp349720 
End bp350538 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content70% 
IMG OID640579868 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001260837 
Protein GI148553255 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0477123 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAAC CCACCCGCTA TCTCGGCCGC CTGGCCGGCA AGGCCGCGAT CGTCACCGGC 
GCCGGAGCGG CGGAGGACGA GATCGGCATC GGCCGCGCCA TCGCCTATAT CATGGCGCGC
GAGGGGGCGA AGGTCGCCTG CGCCGATCTC GACGGCGCGC GCGCCGAGGC GACCGCCGCG
CAGATCCGCG CCGAGGGCGG CGAGGCGATC GCCGTCGCCG CCGACGTCAG CCTGCCCGAG
GATTGCGAGG CGTTGGTAGA AACCACCGTC AAGACCTTTG GACAGCTCGA TATTCTGGTG
AACAATGTCG GCATCTCGGT GCCGACCAAC CTGGAGTCGG TGACGCTCGA CCTGTGGAAC
CGGACGATCG CCGTCAACCT GACCAGCGTC ATGCTGATGA GCAAATATGC GGTGCCGGTG
ATGGCGGCGC GGGGCGGCGG ATCGATCGTC AACATCTCGT CGCTGGCTGG CATGCGGGCG
ATGGGCGCGG TCGCCTATGG CCCCTCCAAG GCGGCGATGG CGCAGCTCTC GCGCGAGATC
GGCGTGCTGC ACGGGCGGCA GGGCATCCGC GTCAACACGG TCGCGCCCGG CCATGTCATG
ACCCCGCACG CGATGAGCAA GCTGCCCGCC AGCATGCGCG AGGCGCGCCG CAAGGTCGGC
CCGCTCGGCG TCGAGGGCGA TGCGTGGGAC GTCGCCCAGG CGGTGCTGTT CATCGCCAGC
GACGAGGCGC GCTTCATCAA CGGCGTCCAT CTCGCGGTCG ACGGCGGGGT CGAGGGGATC
GGCCCGATGG TCGGCCACGC GTTGATCTCC GAGGCATGA
 
Protein sequence
MPEPTRYLGR LAGKAAIVTG AGAAEDEIGI GRAIAYIMAR EGAKVACADL DGARAEATAA 
QIRAEGGEAI AVAADVSLPE DCEALVETTV KTFGQLDILV NNVGISVPTN LESVTLDLWN
RTIAVNLTSV MLMSKYAVPV MAARGGGSIV NISSLAGMRA MGAVAYGPSK AAMAQLSREI
GVLHGRQGIR VNTVAPGHVM TPHAMSKLPA SMREARRKVG PLGVEGDAWD VAQAVLFIAS
DEARFINGVH LAVDGGVEGI GPMVGHALIS EA