| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0327 |
|---|
| Symbol | |
|---|
| ID | 5200884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 348746 |
|---|
| End bp | 349702 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640579867 |
|---|
| Product | phytanoyl-CoA dioxygenase |
|---|
| Protein accession | YP_001260836 |
|---|
| Protein GI | 148553254 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.131272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGG CCGCCCCGAG CCTCATCCCC GAGATGGGCG AATTCAACGT CTCCAACCAT
CTGCTCGGCG ACCGGGAGGG GCTGAAGGCC GCCTGGGAGC GCGACGGCTA CTGGTTCTTC
CGCGACGTGC TCGACAAGCA GGCGATCGCC GAGCTGCGCC AGATCTACAT GGACTATCTC
GGCGAACTGG GCGTCGCCGA CCCGCAGGAC CCCGACGCGC GCTACAACGG CGCCGACCTG
TCGGCGATGC CGGCGATGGT CAACGAGACC GCGATGAACG AGCGCCGGGT CGACCGGGTG
CTGCACCGCG ATCCGCGCAT CGCGGCCTTC TTCCGGCGGC TGTTCGGCTG CGATCCCTTC
TGGGTGCCGT TCACCGTCCA TCGCCAGGTG CCGCCGGCGC GCGATCGCGA CGCGCGGCGG
CTGGAGTTCA TCCATCAGGA CGGCACCTAT AATGACGGGC TCGACTTCCT GATCTGCTGG
ATTCCGCTGG CGGAGATCGC GCCCGAGGTC GGCGGGCTGG CGCTGGTCGA AGGGGTGCAC
CGGCGCGGCA GCCTCCACCG CAAGGACGGC ATGAAGATCC TGCCGATCGC CGAGGCGGAC
ATGGAGATCG GGCGCTGGCG CAGCACCCAT TACCGTCCCG GCGACGTGCT GCTGATGGAC
CTCAATACGC CGCATTCGGG CATCACCAAC CATTCGGACC GCTTCCGCCT GTCGGTCGAC
ACGCGGATCA TGCCATCGAA CGGCAACGTC CCGGTGGTCG GCACGATCGC GGCGGTCAGC
GCCGACGGCG TCACCATCGG CGATCGCGCG TTGCGCTTCG ATGTGACCAG CTTCGTGCGC
GGGCTGCGCG GCGACCAGAT GCCGCTCGCC GACATACCCG GCCGCTATCG CGTCGGGCAG
GAGGTGATCG CCGCCGTCAC CGGCGACCTC GTCCGCAACA TGCGGCCCAT CCAATAA
|
|---|
| Protein sequence | MTMAAPSLIP EMGEFNVSNH LLGDREGLKA AWERDGYWFF RDVLDKQAIA ELRQIYMDYL
GELGVADPQD PDARYNGADL SAMPAMVNET AMNERRVDRV LHRDPRIAAF FRRLFGCDPF
WVPFTVHRQV PPARDRDARR LEFIHQDGTY NDGLDFLICW IPLAEIAPEV GGLALVEGVH
RRGSLHRKDG MKILPIAEAD MEIGRWRSTH YRPGDVLLMD LNTPHSGITN HSDRFRLSVD
TRIMPSNGNV PVVGTIAAVS ADGVTIGDRA LRFDVTSFVR GLRGDQMPLA DIPGRYRVGQ
EVIAAVTGDL VRNMRPIQ
|
|---|
| |