Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0277 |
Symbol | |
ID | 5197566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 292863 |
End bp | 295190 |
Gene Length | 2328 bp |
Protein Length | 775 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640579817 |
Product | TonB-dependent receptor |
Protein accession | YP_001260786 |
Protein GI | 148553204 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.644124 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.280389 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAACAAT CACTACACAT CGCCAGTATT GCGACCATCG CGTTCCTGAC CATGATCCCG GTCGAGGCCC AGGCGCAGGA AGCCGCCAGG GCGGCGCCCG CCGACGAGGC GCCGGCCGCC GGCGGCATCG ACGACATCGT CGTCACCGCC CGCCGCCGCG CGGAGCGCCT CCAGGACGTG CCGCTCGCGG TGAGCGCAGT GTCGACCGCC GCGCTCGAAC GCGCCAACAT CCAGAACGTC GCGCAGCTCA GCCGGCTGGT GCCCAGCCTC ACCTCGGTGC CCGGCCAGGG CGGCAGCCGC TCGCTGCCCA ACTTCTCGAT CCGCGGCCTG TCGCAGCAGG AGCTGACGAT CCTCGCCGAC CAATCGGTGT CGACCTATAT CGGCGACATC GTCGCGGCGC GCACCCAGGG CATCAACAGC GCGCTGTTCG ACATCGCCTC GGTCGAGGTG CTGCGCGGTC CGCAGGGCAC GCTGTTCGGC CGCAACACCA CCGGCGGCGC GATCATCATC CGCCCCGCCC GGCCGACCGA CGAGTTCGAG GGACGGGTCG GCGTGACCGT CGGCAATCTC GACACCTTCA ACGTCGAGGG CATGGTCAAC GTGCCGCTCA GCCCCAACAT CGCGATCCGC GTCGCCGGCC AGCGGCAGCG CGACGACGGC TTCGTCTATG ACGAGATTCT CCAGCGCAAC GTCAACGACA CGAAGCAGGA GGGCGCGCGC GCCTCGATCC TGATGCACAA CGACGATCTG GAATCGCTGA CCGTCTACAA TTATTTCCAC GAGAATGACG GCGGCACGGC GAGCTTCCTC CAGAATGTCC GCGCCACCGG CTCGCTCAAC GGCGCCGCGG TGCGCGCGTC GCGCGGCTAT CGCCCGCTCG AGGACCTGCT GGCCGAGCAG CAGGCGCGCG GCATCTACCG CATCGCCAAC GGCTCGCCGA TCTTCACCAA GGTCGAGACC CACGACATCG CCAACACCAC CAGCTTCGAC CTGTCCGAGA CGATCAAGCT GAAGAACATC GTCGGCTATC GCCATGTGAA GGATCACATT TTCGACGACA TGGACGGCAG TTCGAACGCG CTGCACCCGC AGGAGCGCAT CGATCGCGCC AAGCAGTTTT CGGAGGAGTT CCAGATCCTC GGCGACACCG CCAATCTGAA CTGGATCGCC GGCCTCTATT ATTTCCGCGA GAGCGGCCGC AACCAGGGCA TCTCGGCGGT CGGCGCGGTC GACCCGGGCC TGGTCGAGCC GGACAACGTC GCCGCCTTCC CCGGCACGGC GTACAGCAAC ACCGACACCG CCGCGCGCAA CACCAGCTAT GCGGCCTTCG CGCAGGGCAC CTATCGCTTC GGCGGCGGGC TCAGCCTCAC CGCCGGCATC CGCTACAACC GCGACGAGCG CCAGGCGACG ATCCGCAACC GCACCGCGAC CGCCTGCCGC TTCACCCGCG ATCTCGACAA TAATCCGGCG ACGCCCGAAA CCGCGGTGCC GCTGGCGCAG TGCGAGCTCG GCGTGAAGGA CAGCTTCTCC GAGGTCACCT ACAATGTCAG CCTCGAATAT AAGATCGCGG CGGACAAGCT GGTCTACATC GCCCATCGCC ACGGCTACCG CACGGGCGGC TTCGGCGCCC GCGCCTCGAC CGAGGCCGGC CTGCGCCGCA CCTTCCGGCC GGAGACGGTC GACGACGTCG AGGTCGGCGT GAAGGCCGAC TGGCGGATGG GCGACGCCTT CCTGCGCACC AACCTCGCCG GCTATTACGC CAAGTACAAG GACATCCAGC GGCTGCTGAC CGATCCGGTG GCGGTGCCGC CGACCACGGT GACCACCAAT GCCGGCCGGG CGCGGATCTA CGGCATCGAG GCGGACATCC TGTTCCGCCC GGTGAAGATG ATCGAGCTGA CCGCGAACTA CGCCTATACC AACGCGAAGT TCACCAAGTT CATCTATCCG GACGGCACCG ATCACTCGAA CGATCCGTTC GCCCGTGCGC CGCGCAACGT CTACACGCTG GGCGCCCGCC TGCTCGCGCC GCTCGACGAG GGCCAGGGCG ACGCCTCGGT CGGCGTCAGC TACTACCACA CCGGCGACTA TAGCGGGAAC GACACCTATG TCCCCGGCTA TACCGACGTG AAGGGCTACA GCCTGCTCAA CTTCGACGCG AGCTGGAACC GGGTGATGGG ATCGGGCTTC GACGTGGCGC TGTTCGTCAA CAACGTCACC AAGAAGAAGT ACGACTTCCT GCTGATCAAC CTCGACAGCC TGGGCTATAC CAGCCACACG CCCGGCATGC CGCGCACCTA TGGCGCGACG CTGCGCTACC ATTTCTGA
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Protein sequence | MKQSLHIASI ATIAFLTMIP VEAQAQEAAR AAPADEAPAA GGIDDIVVTA RRRAERLQDV PLAVSAVSTA ALERANIQNV AQLSRLVPSL TSVPGQGGSR SLPNFSIRGL SQQELTILAD QSVSTYIGDI VAARTQGINS ALFDIASVEV LRGPQGTLFG RNTTGGAIII RPARPTDEFE GRVGVTVGNL DTFNVEGMVN VPLSPNIAIR VAGQRQRDDG FVYDEILQRN VNDTKQEGAR ASILMHNDDL ESLTVYNYFH ENDGGTASFL QNVRATGSLN GAAVRASRGY RPLEDLLAEQ QARGIYRIAN GSPIFTKVET HDIANTTSFD LSETIKLKNI VGYRHVKDHI FDDMDGSSNA LHPQERIDRA KQFSEEFQIL GDTANLNWIA GLYYFRESGR NQGISAVGAV DPGLVEPDNV AAFPGTAYSN TDTAARNTSY AAFAQGTYRF GGGLSLTAGI RYNRDERQAT IRNRTATACR FTRDLDNNPA TPETAVPLAQ CELGVKDSFS EVTYNVSLEY KIAADKLVYI AHRHGYRTGG FGARASTEAG LRRTFRPETV DDVEVGVKAD WRMGDAFLRT NLAGYYAKYK DIQRLLTDPV AVPPTTVTTN AGRARIYGIE ADILFRPVKM IELTANYAYT NAKFTKFIYP DGTDHSNDPF ARAPRNVYTL GARLLAPLDE GQGDASVGVS YYHTGDYSGN DTYVPGYTDV KGYSLLNFDA SWNRVMGSGF DVALFVNNVT KKKYDFLLIN LDSLGYTSHT PGMPRTYGAT LRYHF
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