| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0254 |
|---|
| Symbol | |
|---|
| ID | 5196908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 261821 |
|---|
| End bp | 262711 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640579794 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001260763 |
|---|
| Protein GI | 148553181 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.193331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.129991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGAAG ATTACAATCT TTTCGTCACC ATCGTCGAGG CCGGCAGCCT GTCCGCCGCG
GGCCGGCGGC TGCGCATCTC CCCGGCGATG GTGTCGAAGC GGCTCGCCCG GCTCGAGGCG
CGGCTCGGCG CGACGCTGGT CCATCGCACC ACGCGGCGGC TGCTGCTCAC CGATGTCGGC
CAGGGCTTCT ACGAGGATGC CAGCCACATC CTCGACGCGG TCCGCACCGC CGAGGCGCGG
GTCGCCGGAC GGGTGGGGCA GCCGGGCGGG CGGCTGCGCG TCTCGGCGCC GACCTCGTTC
GGGCGGATGC ACGTCGCCCC CTATCTCCAC GCCTTCCTCG ATCGCTATCC CCGGATCGAG
CTGTCGCTCG ACCTCGACGA CGGCTTCGTC GACCTGCTCG GCGAACGGAT CGACGTCGCG
ATCCGCATCG CCACCCGGCC GGAAGGATCG CTGGTCGCCC ATCACCTGGC CGAGAATCGC
CGCATCCTCT GCGCCGCCCC CGCCTATCTC GCCGCGCAGG GCACGCCCGC GACCCTCGCC
GACCTCTCCC GGCACCGGCT GCTCGCCGCC GACCACCAAT TCCCCTGGCG GCTCGAAGGG
TCCGACGGTC CGGTGGGGCT CGACGGGGTG AGCGCGGTCC GCACCAATTC GAGCGAGGTC
GCGCGCGAGC TGACCGTCGC CGGGCTCGGC ATCGCGCTGC GGTCGACCTG GGACGTCGGC
CCGGCGCTGC GCGACGGATC GCTGGTCCGC ATCCTGCCGG AGATCAGCGG CGCGACCGAC
GTCGCCATCT ACGCCGTGCA GCCGCGCGGC ACCGCCGGCG CGCCCAATGC CGGCGCCTTC
GTCGACCATT TCCGGGCGCT CTTCTCGCCG GTGCCGCCCT GGGATAGGTG A
|
|---|
| Protein sequence | MHEDYNLFVT IVEAGSLSAA GRRLRISPAM VSKRLARLEA RLGATLVHRT TRRLLLTDVG
QGFYEDASHI LDAVRTAEAR VAGRVGQPGG RLRVSAPTSF GRMHVAPYLH AFLDRYPRIE
LSLDLDDGFV DLLGERIDVA IRIATRPEGS LVAHHLAENR RILCAAPAYL AAQGTPATLA
DLSRHRLLAA DHQFPWRLEG SDGPVGLDGV SAVRTNSSEV ARELTVAGLG IALRSTWDVG
PALRDGSLVR ILPEISGATD VAIYAVQPRG TAGAPNAGAF VDHFRALFSP VPPWDR
|
|---|
| |