| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0251 |
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| Symbol | hfq |
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| ID | 5196740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 259186 |
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| End bp | 259668 |
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| Gene Length | 483 bp |
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| Protein Length | 160 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640579791 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_001260760 |
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| Protein GI | 148553178 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.222579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.069598 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCGACA AGGTCAATAA TCTTCAGGAT ATCTTCCTCA ACTCGGTCCG TAAGACCAAG
ACCCCCGTCA CGATGTTCCT CGTGAAGGGC GTCAAGCTCC AGGGCATCAT CACCTGGTTC
GACAATTTCT CGGTCCTGCT GCGCCGCGAC GGCCAGTCGC AGCTCATCTA CAAGCACGCC
ATCTCGACGG TGATGCCCGC GCATCCGCTC GACATGGCGG AGATCGACAA GAGCTTCGAG
GACAAGAAGT CCCACCTGCT GCAGGAGGTG TTCCTCTCGG CGGTGCGCAA GGCGCGCGAG
CCGGTGACGA TGTTTCTCGT CAACGGCGTC ATGCTCCAGG GCGAGATCGC GGCCTATGAC
CTGTTCTGCA TGCTGCTGCG GCGGGATGGT CTCAGCCAGC TCGTCTACAA GCATGCGATC
TCGACGGTGC AGCCGGCGCA TCCGATCAAC CTGGCCGAGA TCGACAGCAC GGACGACGAT
TGA
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| Protein sequence | MADKVNNLQD IFLNSVRKTK TPVTMFLVKG VKLQGIITWF DNFSVLLRRD GQSQLIYKHA
ISTVMPAHPL DMAEIDKSFE DKKSHLLQEV FLSAVRKARE PVTMFLVNGV MLQGEIAAYD
LFCMLLRRDG LSQLVYKHAI STVQPAHPIN LAEIDSTDDD
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