Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0249 |
Symbol | |
ID | 5196738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 255218 |
End bp | 257524 |
Gene Length | 2307 bp |
Protein Length | 768 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640579789 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_001260758 |
Protein GI | 148553176 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.513538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0270747 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTAACTG TGTTCCCGAA GCCACGCCCT TGTGGTAATC CGGCCACGAT GGCTGCATAT GGGCTTGTAT CCAGGCGATG GCGCAGGCGC GCGGTGACGG CGCTGCGGCC ACGGCGCCTG CTGCCTTTGC TGGAGATATT GGCGCCGCTG GCCGCATTGC TGGTGGTCGC GGTCAGCTAT CGGGTCGTCA CCGCCAGCGG CAAGCCCGAA ATCCCGATCT CGCCGACCGT CGTGGCGCTG CTGCTCGGCG CCAACCTGCT GTCGTTCATG GTGCTGATGG TGCTCGCCGC CCGCCGGGTG GCGCTGCACC GCGCGGCGCG GTCGGGGCTG GGGGGCAAGG CGCGGCTGCA CGTCCGCCTC GTCGCCTTCT TCTCGCTGAT CGCCACCGCA CCGACGCTGC TGGTGGTGAT CTTCGCGTCG CTGCTGTTCC AGCTCGGCAC CGAATTCTGG TTCTCCGACA AGGCCACCGT CGTGCTGCGC AGCTCCGAGC GGGTCGCGCA GGCCTATGTG ACCGAGAGCA AGGAGCGGCT GCTCGGCGAC ATCCTCGCCA TGTCGGGCGA CCTGCGCAGC GCGCTGTCGG CGACGACGAT CGACGATCCG CGCTTCGCGC CCTTCTTCGC GCGCCAGGTC GCCTATCGCG GCCTGTCGGA AGCGGCGATC ATCAGTGTCG ACCGCGCCGG AACGCCGCAG CTCATCGCGC TCGCCAATCT CGACAAGCGG CCGCTCGACA AGCGCCTGCC GCCCGCGACG CTGCCCTTCC TGGCGGGCGG CCAGCCGCGC ATCACCGCCG GGGCGGGCGA CCGGATCGAG GGCACGATCC TGCTCGACGC GGCGAGCCGC ACCTATCTCT ACATCTCGCG CCAGTCGGAC CGGAACGTGC TGGCCCAGGC CGCCCGCGCG CGATCGGCGC TGGGCGACTA TGTCGCGACC GTCGACCGCG CCCGCGCGCT CCAGCTCCGC TTCAACATCC TGCTGATGAT CATCGCGCTG GCGATCCTCG GCATCGCCAT CTGGGTGGCG ATGACGGTGG CCGACCGGCT GGTCCGCCCG GTCAACGACC TCGTCGCCGC CGCGCGCCGG GTCGCGGCCG GCGATCTCAG CGCGCGCGTG CATATCGATC CGAGCCCCGA CGAGATCGGC ACGCTCGGCA GCGCCTTCAA CCGCATGACC CGCAAGCTGG GCGAGCAGAC CGGCGCGCTG GTCGCCGCCA ACAGCCAGCT CGAAAGCCGC AGCGCCTTCA TCGAGGCGGT GCTGTCGGGC GTGACCGCGG GCGTCATCTC GGTCGACGGC GACCGCCGGA TCACGCTGGT CAATCCCTCG GCGCGGGCGA TGCTCGCCCT GGAGGAACCG GTCGACGGCC GGCCGCTCGC CGACATCTCG CCCGAGCTGC ACCATATCCT CGACGCCGGC GACCGCGAGG CGGTGGTCCA GATCGTCATC GCCGGCGAGC CGCGCACCCT GTCGGTGCGC GCGGTCGCGG CGGAGGGCGC GCGGGTGCTG ACCTTCGACG ACATCACCCA GCGCCTCGCC GACCAGCGCC GCGCCGCCTG GGCCGACGTC GCCCGCCGCA TCGCGCACGA GATCAAGAAC CCGCTGACCC CGATCCAGCT CGCCGCCGAA CGGCTCCAGC GCCGCTACGG CAAGGAAATC CAGTCCGATC CGGGCGTGTT CGAGCGGCTG ACCGCGACGA TCGTCCGCCA GGTCGGCGAC ATGCGGCGGA TCGTCGACGA ATTCTCGTCC TTCGCGCGCA TGCCCAAGCC GGCCTTCCGC GAGGAGGCGA TCGTCGACAT CGCGCGGCAG GCGATGTTCC TGCAGGAGGT CGCCCATCCG GCGATCAGCT TCAGCCTCGA CAGCGAGGGG CTGACCCCGA CGATGATCTG CGACCGCCGC CAGCTCGGCC AGGCGCTGAC CAACCTCGTC AAGAACGCGG TCGAGGCGAT CGAGGAGAAC CCCGCGCAGC ACGCCCCGGG CGTGATCGCG ATGACGATCC GCATCGCCGA GCGGCGGCTG CGCATCGTGC TGGCCGACAA CGGTCCCGGC CTGCCGCCCG AGCGCGAGCG GCTGACCGAG CCCTATATGA CGACGCGCAA GCGCGGCACC GGGCTCGGCC TCGCCATCGT CCGCAAGATC GTCGAGGACC ATCTCGGTAC CTTGGCACTG CGCGACCGGC CCGGCGGCGG CACCATGGTC GAGATGGATT TCGACCTGGA GGCGCTCGGC AGCCTCGCCG TCGAGGGCGC GGACCGCGCC GGCAACGCGG CCGAGGAAGC GAAATTCCCC GAACTCAAGC GAAGTGGAAC TGGTTGA
|
Protein sequence | MLTVFPKPRP CGNPATMAAY GLVSRRWRRR AVTALRPRRL LPLLEILAPL AALLVVAVSY RVVTASGKPE IPISPTVVAL LLGANLLSFM VLMVLAARRV ALHRAARSGL GGKARLHVRL VAFFSLIATA PTLLVVIFAS LLFQLGTEFW FSDKATVVLR SSERVAQAYV TESKERLLGD ILAMSGDLRS ALSATTIDDP RFAPFFARQV AYRGLSEAAI ISVDRAGTPQ LIALANLDKR PLDKRLPPAT LPFLAGGQPR ITAGAGDRIE GTILLDAASR TYLYISRQSD RNVLAQAARA RSALGDYVAT VDRARALQLR FNILLMIIAL AILGIAIWVA MTVADRLVRP VNDLVAAARR VAAGDLSARV HIDPSPDEIG TLGSAFNRMT RKLGEQTGAL VAANSQLESR SAFIEAVLSG VTAGVISVDG DRRITLVNPS ARAMLALEEP VDGRPLADIS PELHHILDAG DREAVVQIVI AGEPRTLSVR AVAAEGARVL TFDDITQRLA DQRRAAWADV ARRIAHEIKN PLTPIQLAAE RLQRRYGKEI QSDPGVFERL TATIVRQVGD MRRIVDEFSS FARMPKPAFR EEAIVDIARQ AMFLQEVAHP AISFSLDSEG LTPTMICDRR QLGQALTNLV KNAVEAIEEN PAQHAPGVIA MTIRIAERRL RIVLADNGPG LPPERERLTE PYMTTRKRGT GLGLAIVRKI VEDHLGTLAL RDRPGGGTMV EMDFDLEALG SLAVEGADRA GNAAEEAKFP ELKRSGTG
|
| |