| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0245 |
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| Symbol | |
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| ID | 5197539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 250766 |
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| End bp | 251767 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640579785 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001260754 |
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| Protein GI | 148553172 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.17015 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCCA GACTGCGCCC CATCGACATC GGTCCCGTGC GGATCGACAG CCCCGTGATT
CTCGCGCCGA TGACCGGCGT GAGCGACCTG CCGTTCCGCA AGGTGGTGCG CGGCTACGGG
TCGGGGCTGA ACGTCACCGA GATGATCGCC AGCCAGGCCG CGATCCGCGA GACGCGCCAG
TCGGTGCAGA AGGCGCTGTG GGACCCGGCC GAGGAGCCGG TGTCGATGCA GCTCGTCGGC
TGCACGCCGA AGGAGATGGG CGAGGCGGCG AAGCTCAGCC AGGATCGCGG CGCCGCGATC
ATCGACATCA ACATGGGTTG CCCGGTGCGC AAGGTCGTCA ACGGCGACGC CGGATCGGCG
CTGATGCGGA CGCCCGAGCT GGCGGTCGAG ATCGTCAAGG CGACGGTCGC GGCGGTCGAG
GTGCCGGTCA CGCTCAAGAT GCGGATGGGC TGGGACCATG ACAGCCTCAA CGCGCCCGAA
CTGGCGCGCA TCGCCGAGGA TGTCGGCGTG AAGATGATCA CCGTCCACGG CCGCACCCGC
TGCCAGATGT ACAAGGGATC GGCCGACTGG GCGTTCATCC GCCGGGTCAA GGAAGCGGTG
TCGATCCCGG TGATCGTCAA CGGCGACATC TGCTCGATCG AGGATGCCGA GACTGCGCTC
GACCAGTCGG GCGCCGATGG GCTGATGATC GGGCGCGGCG CCTATGGCCG GCCCTGGCTG
CTGTCGCAGG TGATGCATTA TCTCGCCACC GGCGAGCGCA GGCCCGATCC GACGATCGAG
CAGCAATATC ACGTCATATT AGCGCATTAT CATGCGATGC TCGAACTCTA TGGGAAAGAG
GTCGGCGTCA ACATGGCGCG CAAGCACATC GGCTGGTACA CCAAGGGGCT GGCCGGCTCG
GCGGAGTTCC GCAACGCCGT CAACCAGGAG CCCGACGCCG CCAGGGTGAT CGCCATGCTC
GGAGAATTCT ACGCGCCATG GCTCTCCCGG GCAGCAGCCT GA
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| Protein sequence | MTPRLRPIDI GPVRIDSPVI LAPMTGVSDL PFRKVVRGYG SGLNVTEMIA SQAAIRETRQ
SVQKALWDPA EEPVSMQLVG CTPKEMGEAA KLSQDRGAAI IDINMGCPVR KVVNGDAGSA
LMRTPELAVE IVKATVAAVE VPVTLKMRMG WDHDSLNAPE LARIAEDVGV KMITVHGRTR
CQMYKGSADW AFIRRVKEAV SIPVIVNGDI CSIEDAETAL DQSGADGLMI GRGAYGRPWL
LSQVMHYLAT GERRPDPTIE QQYHVILAHY HAMLELYGKE VGVNMARKHI GWYTKGLAGS
AEFRNAVNQE PDAARVIAML GEFYAPWLSR AAA
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