Gene Swit_0244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0244 
SymbolispDF 
ID5197538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp249389 
End bp250537 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content74% 
IMG OID640579784 
Productbifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 
Protein accessionYP_001260753 
Protein GI148553171 
COG category[I] Lipid transport and metabolism 
COG ID[COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase 
TIGRFAM ID[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.281494 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGGA AGCCCAGCAT CGCCGCCTTG ATCGTCGCCG CCGGACAGGG CGTCCGCAGC 
GGCGGCGGCG TGCCCAAGCA ATATCGCCGG ATCGGCGGCA AGGCGGTGCT CGCCCATGCC
GTCGACGCGC TGGCGCGCCA TCCGGCGATC GGCAGCGTCC AGGTCGTGAT CGGCGCGGGT
CAGGAGGATC TCCATGCCGA GGCGGTCGGC GGACGCACCC TGCCCCCGCC CGTCACCGGC
GGCGCGACCC GGCGCGATTC GGTGATCGCC GGGCTGGCGG CGGTCGACGC CGACATCGTC
CTGATCCACG ACGCCGCCCG CCCCTTCCTG CCCGCCGCGG TGATCGACCG GCTGATCGCC
GCGCTCGACG GCAGCGACGG CGCGGTTCCC GCGCTCGCGG TCGCCGACAC GCTGGCGAAG
GGCGACGCCC TGCTCGGCGA CGCCGTGCCG CGCGACGGGC TGCACCGCGT CCAGACGCCG
CAGGCCTTCC GCCGCGCCGA CATCCTCGCC GCGCACCGCG CCTGGGACCC GGCGCGCGAA
GCGACCGACG ACGCGCAGGT CGCGCGCGCC CACGGCCTGT CGGTCGCGAT CGTCGAGGGC
GACCGCAGCC TGGAGAAGCT CACTTTTGCC GCCGATTTCG AGGCCGCCGA GGAAAGGATG
GCGATGATCA GCCGCACCGC GATGGGCTTC GACGTCCACG GCTTCACCGC CGGCGACGGC
GTCCAGCTCG GCGGCGTCCG CATCGCCCAT GACCGCGCCC TCGCCGGGCA CAGCGACGCC
GACGTCGCGC TCCACGCGCT GACCGACGCG CTGCTCGGCA CGATCGCGGC GGGCGATATC
GGCAGCCATT TCCCGCCCAG CGACCAACGC TGGAAAGGCG CCGATTCGGC GATGTTCCTG
GCCCATGCCC GCGACCTCGT CGCGGCGGCG GGCGGGATCG TCGACTTCGT CGACCTGACC
ATCATCTGCG AAGCGCCCAA GGTCGGCCCG CACCGCGCGG CGATCCGCGA CCGGATCGCC
GCCCTGCTCG GCCTGACGGC GGGCCAGGTC AGCGTCAAGG CGACCACCAC CGAGCGGCTC
GGCTTCACCG GCCGGCGCGA GGGGATCGCG GCGCAGGCGG TTGCAACGGT GCGCGTGCCG
TCCATATAG
 
Protein sequence
MTGKPSIAAL IVAAGQGVRS GGGVPKQYRR IGGKAVLAHA VDALARHPAI GSVQVVIGAG 
QEDLHAEAVG GRTLPPPVTG GATRRDSVIA GLAAVDADIV LIHDAARPFL PAAVIDRLIA
ALDGSDGAVP ALAVADTLAK GDALLGDAVP RDGLHRVQTP QAFRRADILA AHRAWDPARE
ATDDAQVARA HGLSVAIVEG DRSLEKLTFA ADFEAAEERM AMISRTAMGF DVHGFTAGDG
VQLGGVRIAH DRALAGHSDA DVALHALTDA LLGTIAAGDI GSHFPPSDQR WKGADSAMFL
AHARDLVAAA GGIVDFVDLT IICEAPKVGP HRAAIRDRIA ALLGLTAGQV SVKATTTERL
GFTGRREGIA AQAVATVRVP SI