| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0215 |
|---|
| Symbol | |
|---|
| ID | 5196416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 214097 |
|---|
| End bp | 214879 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640579755 |
|---|
| Product | flagellar biosynthetic protein FliR |
|---|
| Protein accession | YP_001260724 |
|---|
| Protein GI | 148553142 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.598232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACCCC AGGGCCTGGC GGGGATCGAA ACCCAGCTCT GGCTTTGGAT GATCGCGATG
ATCCGGCCGG GCGCGGCGTT CATCGCGGCG CCGGTGTTCG GCGCGCCGCA GGTGCCGATG
CAGCTTCGCG CCGTCGTGGC GCTGGCGATC GGCATCCCCG CGCTGGCCAA CACGCCCTTC
GTGATGCCGG TCGGCGGGAT CGTGACGATC GAGGGCTTCC TGCTGGTCGC GGGGGAGATA
CTCGCCGGGC TCGCGCTCGG CTTCGCGGTG CAGATCGGCT TCTCCGCCGC GCTGGTCGCG
GGCGAGGTGA TCGGCAACGC GATGGGGCTC GGCTTCGCGG GGATGATGGA CCCGGCGACC
GGATCGCCCT CCCCCGCCGT CAGCCAATAT CTCTCGCTGC TCGCGACCTT CCTGTTCCTG
GCGACCGGCG GCCATCTCCA GCTCGCCGCG ATCATCGTCG AGAGCTATCG CGCGCTGCCG
CCGGGCGAGG CCTGGCTCGG CGCGCGCAGC ATCCAGGGGC TGGCGCTGTT CGGCGGCGAC
CTGTTCGCGG CCGGCCTCGC CATCGCCCTG CCGGTCGGCT TCGCGCTGAT CCTCGTCCAG
CTCGTCATGG CGATGCTGGC GCGGTCGGCG CCGCAGATGA ACATCTTCTC GGTCGGCCTG
CCCGCCACGC TGATGGCCGG CCTCGTCCTG CTGGCGATCG CCGCCCCGGT GATGGCCGAC
GGCATCACCG CCGCGATCCA GCGCGGCCTC GCCGAGGCGC GGCTGCTCGC GCTCGGGAGA
TAG
|
|---|
| Protein sequence | MIPQGLAGIE TQLWLWMIAM IRPGAAFIAA PVFGAPQVPM QLRAVVALAI GIPALANTPF
VMPVGGIVTI EGFLLVAGEI LAGLALGFAV QIGFSAALVA GEVIGNAMGL GFAGMMDPAT
GSPSPAVSQY LSLLATFLFL ATGGHLQLAA IIVESYRALP PGEAWLGARS IQGLALFGGD
LFAAGLAIAL PVGFALILVQ LVMAMLARSA PQMNIFSVGL PATLMAGLVL LAIAAPVMAD
GITAAIQRGL AEARLLALGR
|
|---|
| |