| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0178 |
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| Symbol | |
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| ID | 5200704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 169044 |
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| End bp | 171488 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640579717 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_001260687 |
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| Protein GI | 148553105 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATCT ACCATTTCTC GGCCAAGGTC ATCGGGCGCG GTAGCGGACG CAGCGCGGTC
GCGGCGGCCG CCTATCGGGC GGCCGAGCGG CTCCATGACG AGCGCCTCGG GCGGGGCCAC
GACTTCACCA ACAAGGCCGG CGTCGTCCAT TCCGAGATCA TGCTACCGGA CGGCGCGCCC
GAGCGGCTGC GCGACCGCCA GACCCTTTGG AACGAGGTCG AGGCGGGCGA GAAGCGGAAG
GATGCGCAGC TCGCGCGCGA GGTCGAGTTC GCCATTCCGC GCGAGATGAC GAAGGAACAG
GGCGTCGCGC TCGCTCGGGA TTTCGTGAAA GCCGAATTCG TGACACGCGG CATGGTCGCC
GATCTCAATG TGCATTGGGA CGTCGGCGCC GACGGCGAGG CCAAGCCGCA CGCCCATGTC
ATGCTCACCA TGCGCGAAGT CGGGCCCGAC GGGTTCGGCG CCAAGGTGCG CGACTGGAAT
GCGACCGCGC TCCTGCAGCA CTGGCGGGAA GCCTGGGCGG AGCATGTGAA CGAACGCTGC
GCTGCGCTCA GGATCGATGC GCGCATCGAT CATCGCAGCT ACGAGGCGCA GGGCATCGGC
CTTGAGCCGC AGCACAAGAT CGGCGCGGCC GGCGCGCGGC GCGAGGCCAA GGGCGAGGAC
GCCGAGCGGG CCGAAGATCA CCGAACCATT GCGCGCGAGA ATGGCGCCGC GATCGTCGCG
GATCCTTCAA TCGGGCTGGA GGCTATAACC CGGCAACAGG CCACGTTCAC CATGCGCGAC
CTGGCGATGT TCGCGCATCG CCATTCGGAT GGGAAGGAGC AGTTCGACGC GGTGCTTTCC
GCAATGCGTC ATCACGAATC CGTGCTGGCG CTCGGTCGCG ACGGGCGCGG CGCCGAACGA
TTCACGACCG CGAACATGCT GGGCTGCGAG GAGGCGCTGG TGCGCAATGC CGAGCGCCTT
GCCCATGCGC GCGATCACGT CGTCTCGAAG CTCGATATTG CCTGCGCGGT CGGCATCAAC
GAGGCGCGCG GATTGCGGCT CGGTGCCGAG CAGCGCCGGG CGCTCGATCA TGTGTTGTGC
AAGCCCGGTC TCGCCCTGGT GGTCGGCTAT GCCGGTGCCG GCAAGTCGGC CATGCTCGGT
GTCGCGCGCG AGGCCTGGGA GCGGGCCGGG CATAGGGTGC GCGGCGGCGC CTTGTCGGGC
ATTGCCGCCG AAAATCTCGA AGCCGGATCG GGGATCGCGT CGCGCACCCT CGCCAGTCTC
GAACATGGCT GGGCGGGCGG CCATGACTCG CTCACCAAGG GCGACGTGCT GGTGATCGAC
GAAGCCGGCA TGGTCGGCAC CAGGCAGCTC CAGCGCGTGC TCTCCCAGGC TGCCGATGCC
GGCGCCAAGG TTGTCATGGT CGGCGACGTC CAGCAGCTCC AGGCGATCGA GGCCGGCGCC
GCATTCCGCC TGCTTGCCGA GCGTCATGGC GCGGCCGAGA TCGGCGAGGT GCGCCGGCAG
TCGGTGGAAT GGATGCGCGA AGCGACGCGG GCGTTCGCCA CCGGCCGGAC CGGGGATGCG
CTCGACGCCT ATACGGATGC CGGCATGGTC CATGCGGCCG AGTCCCGTCA GGCGGCACGC
GAGGCCTTGA TCGACCGCTG GGACGCCGAA CGCCGCGCCG CTCCTGCCGC TTCGCGCATG
ATCCTCACCC ATCTCAATGC GGAGGTCCGA ATGCTCAACG ACGCTGCACG CGAACGGCGC
GCCGCCGAGG ACGAGCTGGG AGACGATGTC GCCGTTCGCA CCGAACGGGG CCTGCGCCAG
TTCGCCGATA ATGATCGCGT CCTGTTCCTC CGCAACGAGC GCGAGCTCGG CGTGAAGAAC
GGCACGCTCG GCACGATCGA GAAGGCCTCC GCCGACAGGC TCGAAGTGCG GCTCGACGAT
GGCCGCCGGA TCGAGGTCGA TCTCAAATCC TATGGGCATC TCGATCATGG CTATGCGGCC
ACCGTCCACA AAACGCAGGG CATGACGCTG GATCGAACCC ATGTGCTGGC GACGCCGGGG
CTGGACGCGC ATTCCGCCTA TGTTGCGCTG TCGCGCCATC GCGAGGCCAC CGCACTCCAT
TATGGGCGCG ACGACTTCGC AGACGAGGAG AAGCTCAAGC GCACTCTGGC GCGCGAGCGG
CCGAAGGAAA TGGCGCTCGA CTACGGCCAG GACGGGCGCA CACGGCCGGC GGCCGGAACG
GAGGCGGCGA AGAGCGCGCG CGCCGCGGCG CAGGAGCAGT CGGCGAACCC GGCGCAAAGC
GAGCGGGCGA ACCGTCTGCG CACGATGGTC GCCGCGCGTG CGGCGGAGCC CAGGCGCACG
GCCGAGGCGA TGCGCGAGGC GCTCGCCAAG ATAGCCAACG CCGCCAAGGA TGTTGGCCGC
TCCCGCGCGC GGGGCCGCGA TCGCGACTAT GGAGCGGAAC GCTGA
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| Protein sequence | MAIYHFSAKV IGRGSGRSAV AAAAYRAAER LHDERLGRGH DFTNKAGVVH SEIMLPDGAP
ERLRDRQTLW NEVEAGEKRK DAQLAREVEF AIPREMTKEQ GVALARDFVK AEFVTRGMVA
DLNVHWDVGA DGEAKPHAHV MLTMREVGPD GFGAKVRDWN ATALLQHWRE AWAEHVNERC
AALRIDARID HRSYEAQGIG LEPQHKIGAA GARREAKGED AERAEDHRTI ARENGAAIVA
DPSIGLEAIT RQQATFTMRD LAMFAHRHSD GKEQFDAVLS AMRHHESVLA LGRDGRGAER
FTTANMLGCE EALVRNAERL AHARDHVVSK LDIACAVGIN EARGLRLGAE QRRALDHVLC
KPGLALVVGY AGAGKSAMLG VAREAWERAG HRVRGGALSG IAAENLEAGS GIASRTLASL
EHGWAGGHDS LTKGDVLVID EAGMVGTRQL QRVLSQAADA GAKVVMVGDV QQLQAIEAGA
AFRLLAERHG AAEIGEVRRQ SVEWMREATR AFATGRTGDA LDAYTDAGMV HAAESRQAAR
EALIDRWDAE RRAAPAASRM ILTHLNAEVR MLNDAARERR AAEDELGDDV AVRTERGLRQ
FADNDRVLFL RNERELGVKN GTLGTIEKAS ADRLEVRLDD GRRIEVDLKS YGHLDHGYAA
TVHKTQGMTL DRTHVLATPG LDAHSAYVAL SRHREATALH YGRDDFADEE KLKRTLARER
PKEMALDYGQ DGRTRPAAGT EAAKSARAAA QEQSANPAQS ERANRLRTMV AARAAEPRRT
AEAMREALAK IANAAKDVGR SRARGRDRDY GAER
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