| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0170 |
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| Symbol | |
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| ID | 5196874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 162132 |
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| End bp | 163319 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640579709 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001260679 |
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| Protein GI | 148553097 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.238278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.267939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCACC GGCACGATCC AAGCGATCCG GCGCAGCCGC GCGCGCCGCT TTCGACCCGC
GCCACGCCGC CCCGGCCGCG CCGCTTGTCG CGCAAGGCAA TCGCGTTGCT GTCCGGTGCG
GGAGCATTCG CGGTGGCGGG TGCGCTCGCC TACAGCCTGT CGGGCACGTC AGGCCAACGC
GGGCCACAAG AGACGGTGTC GGTCGAGCGC CGCCAGGCGG AGCTGCTGAG CGATGCGCCG
CGTGACTATA GCGAGTTGGC GGAACGATCG GCGGAAGGAA TGGGACCGCC CGCGCCGATG
ACGCCGGACC CCGAGCCGAC ATTCGGCGGC ACCGAAAGCG GCGCGGCGCC ATCCACCACC
GAAGCCGACC AGGCCGAGCA GCGCCGCCGC CAGCAGGCCG AGAGTGCGCG CGGCAGCCGG
CTGTTCGCCG GCGCCGGCGA GGGACGCGGT CCGCCCCAAG CAGCGAACGC CACGCCCACC
GAACCTGCTC CGGCGCCGCC GGCCGAGGGC ACGTCACGAG CGGGCGCACC GCTCGACCGC
CGCGCCGCGT TCGTCGCCGG GGGAACGCCC GAGCCTACCA CCAACAGCGG CCGCCTCACG
CCTCCTCCCG GCCGCCATGT CGTGACCGCC GGCTCGACGA TCGCCGCGGC GCTGATCACC
GGGCTTTCGT CCGACCTTGC GGGCCAGGTC GTCGCGCAGG TGACCGAGGA CGTATTCGAT
TCCGTGACCG GACGGACGAA GCTCATTCCG CAGGGAACGC GGCTGCTTGG AGTCTATGAT
TCGAATGTCA GCACCGGCCA GTCCCGCGCG CTGGTCGTGT GGACGCGGAT GATCCTGCCG
GACGGGCGCA GCATCGGTCT CGATCGCCTG GTTGGCACCG ATGCGGCCGG TCAATCGGGA
TTTGCCGACC GGGTCAACAA TCACTGGGGC ACGATTCTGC GCGCCGGTTT GCTTTCGACG
CTACTCGGGG TCGGCACGCA GGCGAGCGGG TTCGGCCAGA ATGACGCAAT CGCCGACGCG
ATCCGCGACA GTGCCGGCCA GACGGTTGGC CGCGCCGGTG ACCGGATCGT CGAGCGCCAG
CTTGGAATAC AGCCGACCAT CAGCGTGCGC CCCGGTGCGC GGGTTCGCGT ACTCGTAAGC
CGGGATTTGA TATTGGAGCC GTGGCCGGGT CGCGACGCCG GCGGTTGA
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| Protein sequence | MDHRHDPSDP AQPRAPLSTR ATPPRPRRLS RKAIALLSGA GAFAVAGALA YSLSGTSGQR
GPQETVSVER RQAELLSDAP RDYSELAERS AEGMGPPAPM TPDPEPTFGG TESGAAPSTT
EADQAEQRRR QQAESARGSR LFAGAGEGRG PPQAANATPT EPAPAPPAEG TSRAGAPLDR
RAAFVAGGTP EPTTNSGRLT PPPGRHVVTA GSTIAAALIT GLSSDLAGQV VAQVTEDVFD
SVTGRTKLIP QGTRLLGVYD SNVSTGQSRA LVVWTRMILP DGRSIGLDRL VGTDAAGQSG
FADRVNNHWG TILRAGLLST LLGVGTQASG FGQNDAIADA IRDSAGQTVG RAGDRIVERQ
LGIQPTISVR PGARVRVLVS RDLILEPWPG RDAGG
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