| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0169 |
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| Symbol | |
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| ID | 5196873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 161296 |
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| End bp | 162132 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640579708 |
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| Product | P-type conjugative transfer protein TrbG |
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| Protein accession | YP_001260678 |
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| Protein GI | 148553096 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
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| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.227252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.244243 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAACTT TGCTTCTCGC TACCACCATG CTGTTGCCCG CCGCCGCGGC CGCCCAGGCG
CCCGAGCGCG GCACGCGCCC GGTCGCCGCC GCCACCGACG CCGCCCGCAT CGCTCCTCGT
GAGGCGGGCT GGCAGGGCGC GACCCAGCTG TTCGCTTACG CGCCCGGCGG GCTCTATCAG
GTCTATGCGG CGGTCGGCCG CGTCACCGAC ATCGTGCTGC AGGAAGGCGA GAGCCTGTCC
GACACCGGCG CGGTCGCGGC CGGCGACACG GTGCGCTGGG TGATCGGCGA GGCCGCGAGC
GGTACCGGCC CCACTCGTCG CGTGCACATA TTGGTGAAGC CGACCGATCC GGGCCTGATC
ACCAATCTCG TCATCAACAC CGACCGGCGC ACCTATCATG TCGAGCTCAG ATCGACGCCG
TCGACCTACA TGGCGAGCGT GGGCTGGTCC TACCCGCAGG ACGAGCTGAT TGCGATCGAG
GCGCGGCAGC GCGCCGCCGA ACAGGTAGCG GCGACCCGGG TCCAGGCCGG AATCGAGGCT
GCCAGCCTCG ACTTCGCTTA TCGGCTGCGC GGCGCCAATC CGCCGTGGCG TCCCACGCAG
GTGTTCGACG ACGGCGCCAA GACCTACATC CTGTTCCCGG AGACGATTGC GCAAAGCGAG
CTGCCGCCCT TGTTCCTGAT CGGCGAGCGC AACCAAGCCG AGCTCGTCAA CTATCGCTTC
TCGGGCCGCT ACATGATCGT CGACCGCCTG TTCGAGCGCG CCGAGTTCCG CCTCGGCACG
CGGCGGCAGG AGATCGTTCG CATCGAGCGC ACGCGCGCCC GGGAGCGGCA GCAGTGA
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| Protein sequence | MRTLLLATTM LLPAAAAAQA PERGTRPVAA ATDAARIAPR EAGWQGATQL FAYAPGGLYQ
VYAAVGRVTD IVLQEGESLS DTGAVAAGDT VRWVIGEAAS GTGPTRRVHI LVKPTDPGLI
TNLVINTDRR TYHVELRSTP STYMASVGWS YPQDELIAIE ARQRAAEQVA ATRVQAGIEA
ASLDFAYRLR GANPPWRPTQ VFDDGAKTYI LFPETIAQSE LPPLFLIGER NQAELVNYRF
SGRYMIVDRL FERAEFRLGT RRQEIVRIER TRARERQQ
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