| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0164 |
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| Symbol | |
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| ID | 5197043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 155727 |
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| End bp | 158195 |
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| Gene Length | 2469 bp |
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| Protein Length | 822 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640579703 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001260673 |
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| Protein GI | 148553091 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.627498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.339359 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTTCC TCCGCGAGCA TGCCCGCCGC GCATCGCGCC TCTCGGATTT CCTGCCATGG
GCGGCGATGA TCGCGCCCGG CATCGTCCTC AACAAGGACG GGAGCTTCCT GCGCGTGGCG
CGGTTCCGTG GCCCCGATCT CGACAGCGCG ACCCAGGCTG AGCTCATCGC CACCTCCAAT
CGGCTCAACA GCGCCTTGAA ACGCCTCGGC ACCGGCTGGG CGATCTATGT CGAGGCGCAG
CGCAAGGCCT CGCCCGGCTA TCCGGTCTCG ACCGGGTTCG CCGATCCGGT GTCCGCGCTG
ATCGACGAGG AGCGGCGCGA CCAGTTCGAG GGCGGCGACG TCACCCAGCC CAATTTCACC
AGCGCCTACT ATCTCACCCT GCAATGGCTC CCCCCGGCCG ACGACACGTC GCGCGCCTCC
TCAATGCTGT TCGAGGGCGG CGCGGAAGGG ATCGCGACCG CCGCCGATCA TCTGGAGGAT
TTCGAGCGGG ACACGGGCCG CGTCCTCGAC ATGATCGAGG GCGTGATGCC GGAAGCCGCC
TGGCTCTCCG ACGGCGAGAC GCTGACCTTT CTGCATTCGA CGATCTCGAC GCACGAGCAG
AACATCGCCG TGCCGGAGAC GCCGATGCAC CTCGATGCGC TGCTCGCCGA CGACGCCCTA
GTCGGCGGCC TGACGCCACA ACTCGGCGAG AAGCATCTGC GGGTTCTCTC CATTACCGGC
TTTCCGGCCT GGACGGTGCC GGGCATGCTG GACGAGCTCA ATCGGCTAGG CTTCGCCTAT
CGCTGGACCA CCCGTGCGAT CTGCATGGAC AAGGTGACGG CACAGCGCAC CCTGAGCAGG
ATCCGCCGCC TCTGGTTCTC CAAGCGCAAG AGCCTCGCCG CGATCGTCAA GGAGGTGCTG
ACCAACGAGG CCAGCGTCCT CGTCGATACG GACGCGACCA ACAAGTCGGC CGACGCCGAT
GCCGCCCTGC AGGAACTCGG CGCCGACATC GCCGGGTTCG CCTATGTCAC CACCACCATC
ACGGTGCTGG GCGACACGCC GCGCGATGCC GACCTCAAGC TCCAGTCGAT CGAGAAGATC
GTGCGCGGGC GGGATTTCGC GTGCATCGCC GAGAGCCTCA ACGCGCTCGA AGCCTGGCTC
GGCTCGCTCC CCGGCAACCC TTACGCCAAC GTCCGCCAGC CGCCGATCTC GACCCTCAAT
CTCGCCCATG TGATGCCGGT CTCGGCGGTC TGGGCCGGGC AGGACGAAGA TACGCATCTG
GGCGCCCCGC CGCTGTTCCA TGCGCGCACT GAAGGCGCGA CCCCGTTCCG CTTCTCGCTC
CATGTCGGCG ATGTTGGGCA CACGCTGGTC GTCGGCCCGA CCGGCTCGGG CAAGAGCGTG
CTGCTCGCCT TCATGGCGCT CCAGTTCCGC CGCTACGAGG GCGCGCAGAT CTTCGCCTTC
GACCATGGCG GCTCGATCCG CGCCGCGACT CTCGGCGTGG GCGGCGAGTG GCACGACCTC
GGCGGCGCGC TCGGCGGCGG CGGCGCGCCG GTCGCACTCC AGCCGCTCGC GCGCATCGAC
GAGCTCGACG AGCGCGCCTG GGCCGCCGAC TGGCTCGCCG CGATCCTGGC CCAGGAAGTG
TTCGCGATCA CCCCGGAGGT GAAGGACCAT CTCTGGACCG CGCTGGGGAG CCTCGCCGAC
GCGCCGCTCG AGCAGCGCAC CCTGACCGGC CTTGCCGTGC TGATCCAGGC CTCGGGCCTC
AAACGCGCGC TTCAACCCTA TACGCTGGCT GGCCCCTATG GGCGGCTGCT CGACGCCGAC
GGCGAGCGGT TCGGGACGCA TGACGCCCAG GCATTCGAGA CCGAAGGGCT GGTCGGCACG
CCGGCCGCGC CGGCGGTGCT CGCTTATCTG TTCCACCGAA TCGGGCGCCG GCTCGACGGG
CGGCCGACGC TGATCCTGAT CGACGAGGGC TGGCTCGCGC TCGACGATCC CCTGTTCGGC
CGCCAGCTCA AGGAATGGCT GAAGACGCTG CGCAAGAAGA ACGCGTCGGT CGTCTTCGCC
ACCCAGAGCC TCGCCGATAT CGAAGGCTCG GCCATCGCCC CGGCGATTAT CGAGAGCTGC
CCGACCCGGC TGTTCCTCGC CAATGAGCGC GCACTCGAGC CGCAGATCGC CGGCATCTAC
CGGCGGTTCG GGCTCAACGA TCGCCAGATC GAGATCATCG CCTCGGCGAC GCCCAAGCGC
GATTATTACT GCCAGTCGGC GCTGGGCAAC CGATTGTTCG ATCTCGGTCT CGGCCCGCTC
GCGCTCGCCT TCGCCGCCGC CTCGCAGCGC AGCGACCTCA ATGCGATTTC CGCGCTGCTC
GACGCCCATG GCGCTGACGG TTTCGCCGAT GCCTGGCTTC GCCATCGCGG CCTCGGCTGG
GCCGCCGACA TCGTCACGGC CGAGCGCCCT CCATCCCCCG CCCTCCAAGA AGAGGAGATC
ATCGCATGA
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| Protein sequence | MMFLREHARR ASRLSDFLPW AAMIAPGIVL NKDGSFLRVA RFRGPDLDSA TQAELIATSN
RLNSALKRLG TGWAIYVEAQ RKASPGYPVS TGFADPVSAL IDEERRDQFE GGDVTQPNFT
SAYYLTLQWL PPADDTSRAS SMLFEGGAEG IATAADHLED FERDTGRVLD MIEGVMPEAA
WLSDGETLTF LHSTISTHEQ NIAVPETPMH LDALLADDAL VGGLTPQLGE KHLRVLSITG
FPAWTVPGML DELNRLGFAY RWTTRAICMD KVTAQRTLSR IRRLWFSKRK SLAAIVKEVL
TNEASVLVDT DATNKSADAD AALQELGADI AGFAYVTTTI TVLGDTPRDA DLKLQSIEKI
VRGRDFACIA ESLNALEAWL GSLPGNPYAN VRQPPISTLN LAHVMPVSAV WAGQDEDTHL
GAPPLFHART EGATPFRFSL HVGDVGHTLV VGPTGSGKSV LLAFMALQFR RYEGAQIFAF
DHGGSIRAAT LGVGGEWHDL GGALGGGGAP VALQPLARID ELDERAWAAD WLAAILAQEV
FAITPEVKDH LWTALGSLAD APLEQRTLTG LAVLIQASGL KRALQPYTLA GPYGRLLDAD
GERFGTHDAQ AFETEGLVGT PAAPAVLAYL FHRIGRRLDG RPTLILIDEG WLALDDPLFG
RQLKEWLKTL RKKNASVVFA TQSLADIEGS AIAPAIIESC PTRLFLANER ALEPQIAGIY
RRFGLNDRQI EIIASATPKR DYYCQSALGN RLFDLGLGPL ALAFAAASQR SDLNAISALL
DAHGADGFAD AWLRHRGLGW AADIVTAERP PSPALQEEEI IA
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