| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0162 |
|---|
| Symbol | |
|---|
| ID | 5199107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 155140 |
|---|
| End bp | 155454 |
|---|
| Gene Length | 315 bp |
|---|
| Protein Length | 104 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640579701 |
|---|
| Product | conjugal transfer protein TrbC |
|---|
| Protein accession | YP_001260671 |
|---|
| Protein GI | 148553089 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3838] Type IV secretory pathway, VirB2 components (pilins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.585126 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGTG TCCGTTCCGC CCGTCTTGCC GCCGCGCTGG CGCTGGCGGC GCTCTACGCC
GCGCCCGCCT GGGCAGGCGG CTCGGGCATG CCGTGGGAGA CTCCGCTCCA GTCGATCGTG
GATTCAGTGC AGGGTCCGGT CGCGCGCGTG ATCGGCGTCA TCATCATCGT CATCACCGGC
CTGACCCTCG CCTTCGGCGA CACGGCTGGC GGGTTCCGTC GGCTGATCCA GATCGTGTTC
GGCCTGTCGG TCGCGTTCGC GGCCAGCTCC TTCTTCCTCT CCTTCTTCAG CTTTGGCGGC
GGGGCGCTCG TCTGA
|
|---|
| Protein sequence | MIRVRSARLA AALALAALYA APAWAGGSGM PWETPLQSIV DSVQGPVARV IGVIIIVITG
LTLAFGDTAG GFRRLIQIVF GLSVAFAASS FFLSFFSFGG GALV
|
|---|
| |