| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0154 |
|---|
| Symbol | |
|---|
| ID | 5200262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 149126 |
|---|
| End bp | 150481 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640579693 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001260663 |
|---|
| Protein GI | 148553081 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.543339 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA TCACCAAGAG GCTTGTAGAT GCCTCCGAGC TGCGTGCGAA GGACTATGTC
ATCTGGGACG ATGAACTGCC CGGTTTCGGG CTCCGCGTGT TCGTCTCCGG CAAGCGCAGC
TATGTCATTC AGTACCGCTC CGGTGGGCGG TCGCGCCGCT ATACAATCGG GCTTCATGGA
GTCTGGACGC CTGAGACTGC ACGGCAGGAG GCGAAGATCC TGTTCGGACG GATCGCCCAG
GGGGATGATC CGGCGGAGGA ACGCCAGCTC AATCACAGGG CGATCACCAT CAAGGAACTC
TGCGCACTGT ATGTCGCGGA TCTCGAAGCC GGCCTCATTC TCGGCAAGGG CGGCCGTCCC
AAGAAGCCCG GCACCATTGT CACTGACATG GGGCGTATTC GCCGCCACAT CGTTCCGCTC
ATTGGCCGGC GGAAGGTCAA GGATCTGACG AAGGCGGACG TGAACCGTGT GCTGAAGGAT
ATCATGGCGG GCAAGACCGC TGTTGTCGCC AAAACGAAGA AGCTCCGGGG GAAGGCGATC
GTTCGCGGCG GTGTCGGTAC GGCAACTCGA ACGATCGGGC TGCTCGGCGG CATCCTGACC
TACGCGATCG AAGCCGGGAT CATTGACACC AATCCCGCTC ATGGGATCCG CAAGCCGAAG
GACAATGTGC GGGATCGGCG TCTGACCGAG TCCGAATATC GGTTGCTCGG CCAGATCATC
AGGGATGCCA AGGAGGAGGG CCGGTACGCC GTTGTCGCTG AGATCACCCG CGTGATCGCG
CTGACCGGCT GCCGTCGCGG CGAGATTATC AACCTCGCGC GAACGGAAGC GGATATCGGC
GCGAGTTGCC TGCGGCTCGA CGACACCAAG GAAGGCAAGT CAGTGCGGCC GGTCGGTCTG
CCCGCAGTCG AGGCACTCGA GGCCCGGCTG GATGCAACTA CCGGCACTTA TCTGTTCCCC
GGCCAAGGGG AGGACAATGC TTTCGGCTGC TTTCCCACGC ACTGGAAGAA GCTGATTGAG
AACACGCCGC TTGAGGATGT GACCCCGCAT GTCCTTCGGC ACAGCTTTGC GAGCATCGCG
AACGACCTGG GGTTCACCGA AGTCACGATC GCGGCCCTGC TCGGTCACGC GAAGGGATCC
GTCACCGGTA AGTACATCCA CACCCTCGAC ACGGCCCTGA TCATGGCGGC GGATACGGTC
TCGGGTTACA TTCAGGGACT GCTCGACGGC GTTGAATTCA AGCAGACCGC CTATGCTCTC
GATCGCGACT CACGGAAGGC GGCGCTTGCC CGCTTCCTCC AAGAGGCTGC CGGAAATGAT
GATACGCCGG TCTCAGATGA TCGTCTGGCG GCGTAA
|
|---|
| Protein sequence | MGKITKRLVD ASELRAKDYV IWDDELPGFG LRVFVSGKRS YVIQYRSGGR SRRYTIGLHG
VWTPETARQE AKILFGRIAQ GDDPAEERQL NHRAITIKEL CALYVADLEA GLILGKGGRP
KKPGTIVTDM GRIRRHIVPL IGRRKVKDLT KADVNRVLKD IMAGKTAVVA KTKKLRGKAI
VRGGVGTATR TIGLLGGILT YAIEAGIIDT NPAHGIRKPK DNVRDRRLTE SEYRLLGQII
RDAKEEGRYA VVAEITRVIA LTGCRRGEII NLARTEADIG ASCLRLDDTK EGKSVRPVGL
PAVEALEARL DATTGTYLFP GQGEDNAFGC FPTHWKKLIE NTPLEDVTPH VLRHSFASIA
NDLGFTEVTI AALLGHAKGS VTGKYIHTLD TALIMAADTV SGYIQGLLDG VEFKQTAYAL
DRDSRKAALA RFLQEAAGND DTPVSDDRLA A
|
|---|
| |