| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0151 |
|---|
| Symbol | |
|---|
| ID | 5199820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 146216 |
|---|
| End bp | 147055 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640579690 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001260660 |
|---|
| Protein GI | 148553078 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0562554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.687826 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCG TCCTGTTGCG TACCTTCCTG GCGGCGGCGA GCACGGGGAG CTTCGCCAAT
GCGGCGCTGC GCGTGAACGC CAGCGCGTCG ACCGTGACCG AAAGGATCCG CCAGCTCGAA
CATCGCGTCG GCGCGCGGCT GTTCGAGCGC GACAAGCGGG GGTGCCGGCT GACGGCGGCG
GGGAAGCGCT TCCACGAGCC CGCGCTCAAG GCGATCCGCA CCTGGGAGAT CGCCTGCCAC
GACATCGCCC TGCCGGAAGC CTTCTCCCGC AGCATCGCGA TCGGTGGCCA ATATGCCTTG
TGGCACCATT TCCTGACCGA CTGGCTCGCC ACGGCCCGCG CGGCCCTTCC CGACGTCGCG
TTCCGCGTCA CCGCGGGCGC CTCCGCGCGG CTGAACCGGG ACATCGTCGA GGGGCTGCTC
GACCTCGTCG TCCTCTACGA TCCGGTGTTC CGCAAGGGAA TCACGGTCGA GAAGCTGTTC
GACGACGATC TCGTCCTCGT TTCGGGCGCT GGCAGCGACG ACTGGCAGGC CCATTATGTC
AGGATCGAAT GGGGGCAGGG GACGCTCGGC GAGATCGCGG CCCGCCTGCC GTCCCTGCCC
GAAAGCGGAC TGATCCTCGA CCTCGGCATC CATTCCGCGC GATGGCTGGT CGAGCAGCGC
ATGTGCGGCT TCATGCCCCG GCGCGTCGTC CAGGACCTGC TCGACAGCGG CGACCTCCGC
CTCGTCGAAG GCGCGCCTCG CTTCCACTAT CCCGCCTATA TGTGCTGGCG CGGGGATGTG
GATCAGGATC TGGTGAAGGA CCTGGCCCGG CTGCTGCGAA GCCCGTTTGC GGGGAGCTGA
|
|---|
| Protein sequence | MDIVLLRTFL AAASTGSFAN AALRVNASAS TVTERIRQLE HRVGARLFER DKRGCRLTAA
GKRFHEPALK AIRTWEIACH DIALPEAFSR SIAIGGQYAL WHHFLTDWLA TARAALPDVA
FRVTAGASAR LNRDIVEGLL DLVVLYDPVF RKGITVEKLF DDDLVLVSGA GSDDWQAHYV
RIEWGQGTLG EIAARLPSLP ESGLILDLGI HSARWLVEQR MCGFMPRRVV QDLLDSGDLR
LVEGAPRFHY PAYMCWRGDV DQDLVKDLAR LLRSPFAGS
|
|---|
| |