| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0108 |
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| Symbol | |
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| ID | 5198996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 105080 |
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| End bp | 106864 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640579647 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001260618 |
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| Protein GI | 148553036 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0509373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCGG CGAAAACCCA TATCATGTCT ACATCCGATC GGGTCGGCAG CGATCCCTCA
TTGCCCGTGC ACAAGCTCCC CGCCGCGCTC CAGGAACTGC TCGACACGCC GCGCTCGGCC
GCGCAGCAGG AGTTCATCGA CACCCTGCCG ATCGCGATCG CGCTGGTCTG CCTGGTCGAT
CGGAAACCGG CGATATTGGC GCGAAACCGC GCCTTCCTGC AGCTCGCCGA CCGTCATAGC
AGCCGCCGCG AGATCGATCC GGGCCGCGAC CTGTGCGTCG GCATCGCCCT GCCGCTGCTC
CCCGAGATCG AGGATTTCCT GAACGGCGAC GAGAGCGACC GGTCGTTCGA CATGCAGGAG
GGCGACGGCA TCAGCGGACG CCATTTCGCG GTCCGCCTGT CGCGCCTGTC GGGCGGCGAA
TCACCCGTGC CGCGCTGCAT ATTGTCGCTG ATCGACCGCA CCCAGCAGGT CGAGGGCGAA
CGCTCGCTGC GCACCCAGAT GCTGCGCGAC AGCCTGACCG GCTTGCCCAA CCGCGCGGCC
TTCGCCGAGC AGGCCGAGCA TGCGATGCTC AACTATGCGG CCGAGGGGCG CCAGTTCGCG
GTGCTGCTGA TCGACCTCAC CCGCTTCAGC CGGGTCAATG AGGGGGTCGG CTCCCTGGCC
GGCGACGAAC TGATCATCAC CGTCGCGCGC CGCCTGGTCT CGGCGCTGCG CGCGGGCGAC
GTGCTGGCGC GGCTGGCCGG CGACGAATTC GCGGTGCTGC TCGGCGTCGC CGACGATCCG
TCGGAGGCGA TCGCGGCCGC GCGCCGCATG CAGGCCTGCC TCGCCACGCC GATCCGGCTC
GGCGATCTCG AGATCAAGAT CGACTGCGCG GTCGGGGTGG CGATGATGGC GCCCGCGATC
GACGATGCCG AAGACCTGAT CCGCAACGCC CAGATCGCGA TGAAGCGCGC CAAGCAGTCG
GGTCATGCCG AACTCTACCA GGCCGGCGAC AGCGTCACCG CGCGCCAGCG CTTCAGCCTG
GAGACCGAGC TGCGCCGCGC GATCGAGCGC GACCAGCTCC ATCTCGCCTT CCAGCCGCTG
ATCGAGCTGT CGACCGGCCG GGTGATCGGC TTCGAGGCGC TCGCCCGCTG GGACCATCCC
GAAAAGGGCG CGATCTCCCC GGTCGACTTC ATCCCGGTCG CCGAGGAGTC GGGGCTGATC
GTCGCGCTCG GCCGCTGGGC ATTGCGCGCC GCCACCCGCA CCCTCGCCGA ATGGGACCGC
CGGGCGGGCG CGCCGCTGCC GGTCCATATG GCGGTCAACG TCTCGGCGGT GCAGTTCCAG
CGCGACGACG TCGTCTCGGC GATCAAGGCC GCGCTGACCG AGAGCGGCAT CGCCGGCAGC
CGGCTCAAGA TCGAGCTGAC CGAAAGCTGC ATCGTCACCG ATCCGGACGG CATCGCCCGG
GTGCTGCGCG CGATCCACGG CCTCGACGTC ACCATCGCGA TGGACGATTT CGGCACCGGC
TATTCGAGCC TCACCTATCT GCAGCGGCTG CCGATCGACG TGCTGAAGAT CGACCGCAGC
TTCGTCGCGC CGATGCTCCA TGACCGCGAC TCGGTCGCGA TCGTCCGCGC CATCCTCGGC
CTCGCCTCGG CGCTGGGCAT GGCGACGACC GCCGAGGGCG TCGAATCGGA AGCGCTGATC
GAGACGCTGA TCGGGCTCGG CTGCGACATC GCCCAGGGCT ATTATTTCGC CCGGCCGCTG
CCGTCGGACG AGGCCTTCGC CTATCTGCGG TCGCGTCCGG CCTGA
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| Protein sequence | MRAAKTHIMS TSDRVGSDPS LPVHKLPAAL QELLDTPRSA AQQEFIDTLP IAIALVCLVD
RKPAILARNR AFLQLADRHS SRREIDPGRD LCVGIALPLL PEIEDFLNGD ESDRSFDMQE
GDGISGRHFA VRLSRLSGGE SPVPRCILSL IDRTQQVEGE RSLRTQMLRD SLTGLPNRAA
FAEQAEHAML NYAAEGRQFA VLLIDLTRFS RVNEGVGSLA GDELIITVAR RLVSALRAGD
VLARLAGDEF AVLLGVADDP SEAIAAARRM QACLATPIRL GDLEIKIDCA VGVAMMAPAI
DDAEDLIRNA QIAMKRAKQS GHAELYQAGD SVTARQRFSL ETELRRAIER DQLHLAFQPL
IELSTGRVIG FEALARWDHP EKGAISPVDF IPVAEESGLI VALGRWALRA ATRTLAEWDR
RAGAPLPVHM AVNVSAVQFQ RDDVVSAIKA ALTESGIAGS RLKIELTESC IVTDPDGIAR
VLRAIHGLDV TIAMDDFGTG YSSLTYLQRL PIDVLKIDRS FVAPMLHDRD SVAIVRAILG
LASALGMATT AEGVESEALI ETLIGLGCDI AQGYYFARPL PSDEAFAYLR SRPA
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