| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0078 |
|---|
| Symbol | |
|---|
| ID | 5197129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 73968 |
|---|
| End bp | 75779 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640579618 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_001260589 |
|---|
| Protein GI | 148553007 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGACCA CGCAGAACAG AAAGAACTTC ATGGTCAATC CCGACGCTGA CGCGACCACC
GAACCCGCAT CGCCGCATGT GAGCCGATCG GACGGCGACA CCTGGTTCGG TCATCCCAGG
CAGCTCGCGA GGCTCTTCTC GACCGAGGCG ATGGAACGCT TCGGCTATTA TGGGATGAGG
GCGCTCCTCA CCCTCTACCT CACCCAGCAT TTCCTGTTCA GCGACCAGAC GACCAACGGC
CTCTATGGCG GCTTCACCGC GCTGGTCTAC CTGACCCCGC TCGTCGGCGG CCTGCTCGCC
GATCGCTATC TCGGTTCGAA GAAGTCGGTG AAATTCGGCG CGATCCTGAT GTCGATCGCC
TATTTCACGC TCTGCTTCGG CGGCCAGACC GCCAAGCCCT ATGCGGTGAT CGACGGCAGC
CGCTACGAAG TGGTGATCGA CGAGGCCAAG CAGCAATATC TCGTCGACGG CGCCCAGAAG
CTGGCGATCA AGGGGCAGGA GGACGGCTCG GTCGCGCTCG TCGCCCCGGA CGGCTCGGTC
GCCCGCACCG TCGCCAAGGG CGGCTTCAAG GCCGATGCCG ACCGCGATCC CTTCCACACC
GGCCTGATGC TCGTCGCGCT GAGCCTGCTC ACCGTCGGCA ACGGCTTCTT CAAGCCCAAC
ATCTCGACGA TCGTCGGCGC GCTGTACGAG AAGGGGGACC GGCGCCGCGA CGCCGGCTTC
ACCATCTTCT ACATGGGCAT CAACCTCGGC TCGCTCTTCT CGCAGATACT CTGTCCGTTC
CTGGCGGTGG CGCTCGGCTG GTGGGCGGGC TTCGGCCTCG CGGCGATCGG CATGCTGATA
AGCTGGGCGC TGATCCAGTT CGCGGGCGAG AAGCTGGCGG GCTATGGCGA GCCGCCGGAA
GGGCAGGAGA AGGACCGCAG CCTGCTGATC TACATCGGCG CGCTCGCGGT CGTGCCGATC
GGCTGGTTCC TGTTCCTCAA CCTGATGGCG AGCCCGGCGC CCGAGGCCGG CGTCGGCATC
GTCGGCTATC TGCTCGGCCT GCCGATCATG GGCAAGGTGC TGTTCGCGAC CTTCCTGGCA
TCGGTGATCC TGATCCCGCT CTGGGCGCTC AAGGCCGGCA ACAAGGTCGA GTTCCAGATG
ATGATTGCGG CGATCGTGAT GATCGTCTTC AACGTCGTCT TCTGGACGCT GTTCGAGCAG
GCCGGCTCCT CGCTCACCCT GTTCGCCGAT CGCAACACCG ACCTGTCGGT GTTCGGCCTG
TTCACCATGT CGGCGGGGCA GACCCAGTTC TTCAACGCCT TCTTCATCGT CGTGCTGGCG
CCGCTGACCT CGCTCCTGTG GAACGCGCTC GGCCGCCGCG GGCTGGAGCC GTCGATCCCG
GTCAAGTTCG CGATCGCGCT GGCGGGCGTC GGTCTCGGCT TCCTCGCGCT GGTGTGGGGC
ACGCAATATG CCGGGGCGGA CTTCAAGGTG TCGGTCTGGT GGCTGGCGCT GCTCTACCTG
ATCCACTCGA TGGCCGAGCT GTGCATCTCG CCGGTCGGCC TGTCGATGAT CACCAAGCTG
TCGATCGCGC GCGTCGTCGG GCTGATGATG GGGCTGTGGT TCCTGTCGAT CAGCTGCGCC
CAATATGTCG CGGGCATCGT CGCCCAGGTC GCCAGCGTCG AGACGGTCGG CGGCCAGGTC
ACCAACCTCA AGGTCAGCCT GGAGACCTAT GCCGGCGTGT TCCAGACGAT CGGGCTCGCT
TCGGTCGCGA TCGGCGCGGT CCTCCTCGTC CTTTCGCCTG TCATCAAGAA GTGGATGCAT
GGTGTTCAAT AA
|
|---|
| Protein sequence | MPTTQNRKNF MVNPDADATT EPASPHVSRS DGDTWFGHPR QLARLFSTEA MERFGYYGMR
ALLTLYLTQH FLFSDQTTNG LYGGFTALVY LTPLVGGLLA DRYLGSKKSV KFGAILMSIA
YFTLCFGGQT AKPYAVIDGS RYEVVIDEAK QQYLVDGAQK LAIKGQEDGS VALVAPDGSV
ARTVAKGGFK ADADRDPFHT GLMLVALSLL TVGNGFFKPN ISTIVGALYE KGDRRRDAGF
TIFYMGINLG SLFSQILCPF LAVALGWWAG FGLAAIGMLI SWALIQFAGE KLAGYGEPPE
GQEKDRSLLI YIGALAVVPI GWFLFLNLMA SPAPEAGVGI VGYLLGLPIM GKVLFATFLA
SVILIPLWAL KAGNKVEFQM MIAAIVMIVF NVVFWTLFEQ AGSSLTLFAD RNTDLSVFGL
FTMSAGQTQF FNAFFIVVLA PLTSLLWNAL GRRGLEPSIP VKFAIALAGV GLGFLALVWG
TQYAGADFKV SVWWLALLYL IHSMAELCIS PVGLSMITKL SIARVVGLMM GLWFLSISCA
QYVAGIVAQV ASVETVGGQV TNLKVSLETY AGVFQTIGLA SVAIGAVLLV LSPVIKKWMH
GVQ
|
|---|
| |