Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0061 |
Symbol | |
ID | 5196940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 59881 |
End bp | 60846 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640579600 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_001260572 |
Protein GI | 148552990 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.102185 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGGGG GGAAATCGAC ATTGCATGCC GTGGTGCCGC AGGATGCCGA GGGCTGGCGG CTCGACCGGG CGTTGGCCGC GGCGCTGCCG ACATTGTCGC GCGAGCGGCT GAAGGCGCTG ATCTCCTCCG GCCAGGTCAG CCACGCCGAC GGCGCGCTCG CCCGCGATCC TGCGATGAAG GTCGCGCCCG GCGCGCGCTT CGCGGTGATC GTCCCCGATC CCGCCCCCGC GCACAACGCG GCGCAGGATA TCCCGCTCGT CGTCGCCTAT GAGGACGAAC ATCTGATCGT CATCGACAAG CCCGCCGGGC TGGTCGTCCA TCCGGCGGCC GGCAATCCCG ACGGGACGCT GGTCAACGCG CTGCTCCACC ATTGCCGGGG CAGCCTGTCG GGGATCGGCG GGGTCGAACG GCCCGGCATC GTCCACCGCA TCGACAAGGA CACGTCGGGG CTGATGGTCG CCGCCAAGAC CGATCCGGCC CATGTCGGGC TGGCGGCGCA GTTCGCCCGG CACAGCATCG ACCGGCGCTA CCGGGCGATC GTGGCGGGAA CGCCGCGCCT TGCTGCCGGG ACGGTCGACG CGCCGCTCGC GCGCTCGACC GCCGACCGCA AGAAGATCGC GATCGTCGCC GACGGGCGCG GCAAGCGCGC CGTCACCCAT TACAGCGTGA TCGAGCCGCT GCGCCGCGCC GCGCTGGTCG AATGCCGGCT GGAGACGGGT CGCACCCACC AGGTGCGCGT CCACATGGCC TCGCTCGGCC ATCCGCTGCT CGGCGACCCG GTTTACGGGC GCAGCCGGCC GGAACATCGC GAGTTGCTCA ACCGTTTGAA ATTCCATCGC CAGGCGCTGC ACGCGGCCCG GCTGGGCTTC ATCCATCCGG TGACAAGCGC GGCTTTATCT TTCGATAGCG AAATTCCGCA GGATATGCAG GATTTGTTCA GCGAACTGCG TGTAAGGGTG CTATAG
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Protein sequence | MTGGKSTLHA VVPQDAEGWR LDRALAAALP TLSRERLKAL ISSGQVSHAD GALARDPAMK VAPGARFAVI VPDPAPAHNA AQDIPLVVAY EDEHLIVIDK PAGLVVHPAA GNPDGTLVNA LLHHCRGSLS GIGGVERPGI VHRIDKDTSG LMVAAKTDPA HVGLAAQFAR HSIDRRYRAI VAGTPRLAAG TVDAPLARST ADRKKIAIVA DGRGKRAVTH YSVIEPLRRA ALVECRLETG RTHQVRVHMA SLGHPLLGDP VYGRSRPEHR ELLNRLKFHR QALHAARLGF IHPVTSAALS FDSEIPQDMQ DLFSELRVRV L
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