Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0010 |
Symbol | |
ID | 5200782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 8740 |
End bp | 10554 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640579547 |
Product | hypothetical protein |
Protein accession | YP_001260521 |
Protein GI | 148552939 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCCCA GGCCAAGTAA GAAGGCCTTC CTCGCGCTGA CGGCGGGTGC GGCCTCGCTG GCCGCGGTCG CCGCGTTCGC GCAGGAATCG CTGCTGCCGC CCGGCTTCGG CAACCAGCCG CCGCCGGCCA ATCGGCCGCA GCCGGCCGCC CCCGCGCCGG CCCAGCCGGC CGCCGGCCCG ACGCAGGCGG CACCGGCCGC GCCCGGCGCG TCGGTTGCGC CCACGCTGAC GCTCGACCCC GCCATCTTCG CGTCGGCCGA GCCCGATGCG CCGGTCGTCC CGGTCGAGGA GCTGCCGCCT TCGGCGCGCC GCTCGATCGA CGCGGTCGGG CCGCTCGCGG GCTTCGGGCC CAATGCCTGG GGCATGGCCG ACGGCCGCTT CCTTTCCGCG CTGATGCGGC GGCTGGACGT GCCGATCGCC TCGCGCTGGG CTTCGATCAC GCTGCGCCGC GCGCTGCTGA CCCGGGTGGG TACGCCGGAC AATGTCTCGG CGCCCGACTG GATCGCCGAA CGGGCCTGGC TGCTGCTCCG GATGGGCGAG GCGGACGGCG CGCGGATGCT GATCGAGGGC GTCGACGTCG ATCGCTTCAA CGCCAAGCTC TACACCGTCG CGGGGCAGAG CGCGCTCGCC GGCGCCGACG CGGCGGGGCT CTGCGCGCTG GCCGACGGCG GCGCGATCCG CAGCCGCGAG GCGGTCTGGC CGATGGCGCG GGCGATCTGC GCGGCGCTGT CGGGCGACAC CGCGATCGCC GACGTGCTGA TGGACCAGGC GCGCCGCCGG ACCAGCAATC CGCAGGGCAT CGACGTCCAG CTCGCCGAAC GGATGATGGG CGTCAACGGC GCCGGCCGGC GCAGCATCAG CGTCGAATGG ACCGGGGTCA ACCAGCTCAC CGCCTGGCGC TTCGGCATGG CGAGCGCGCT CGGCCTGACC ATCCCGGCCG ATCTCTACCG CACGGTCGGC CCGCAGGTGG TGGCGTGGAG CGCGCGGGCG CCGATGATCC CGCCGGCCGA GCGGCTCGAT GCGGCGATGA CGGCGGCGCG GCTCGGCGTC TTCTCCAATT CGGCGCTGGT CGACCTCTAC GCGCAGGCCG CCGACGAGAG CGGCGACTTC TCCAGCGACA CCCCGGCCGG CCGGCTGCGC CTCTGCTATG CGGGCGACGA TGCCGGCGCG CGCCTCTCGG CGATGCGGGG CTTCTGGAGC GGCGAAGGGC AGGGCGACGG CAAGCAGGTC GACCGCTATG CCGGGCTGAT CCTGACGGCC CGCGCGGCGG CGCGCATCGC GCCCGACAGC GATCATGTCT CCGACGCGGC CGGCCTGATC GGGTCGATGA TGTCGGCCGG GCTCGACCGC AAGGCGGCGG CCTGGGCGCC GATCGTCTCC GGCATGTCGG CGGGCAAGGG CGACGACGCC TGGGCGATCC TCGCGGTCGG CACGCCGCGC GCCGTCGTCG ACGTCTCGGC CGACCGGCTG TCGGCGGTCG CCGACCGCTG GAGCGCGGAG AACCCGCAGA AGCTGCGCCT GCTGCTCGCC GCGCTCGCCG GGCTCGACCG GTTGCAGACC GAGGAGCAGA TGCGCCTGCT GCAGGAATAT CAGGTCGGGT TCGACAATCG CAGCAACTGG GGCCGGCTGC TGCTGCAGGC CGCCGACCGC AAGGAGCCGG CGACGGTGGC GCTGCTGGTC GCGGTCGGGA TGCAGAAGAC CGGCTGGAGC GGCCTGTCCT CGGCGATGTT CGCGACGATG ATCCGCGCGC TGCACGACGT CGGTCTCGAC GGCGAGGCGC GGATGATCGC GGCCGAGGCG ATGACCCGCT TGTAA
|
Protein sequence | MKPRPSKKAF LALTAGAASL AAVAAFAQES LLPPGFGNQP PPANRPQPAA PAPAQPAAGP TQAAPAAPGA SVAPTLTLDP AIFASAEPDA PVVPVEELPP SARRSIDAVG PLAGFGPNAW GMADGRFLSA LMRRLDVPIA SRWASITLRR ALLTRVGTPD NVSAPDWIAE RAWLLLRMGE ADGARMLIEG VDVDRFNAKL YTVAGQSALA GADAAGLCAL ADGGAIRSRE AVWPMARAIC AALSGDTAIA DVLMDQARRR TSNPQGIDVQ LAERMMGVNG AGRRSISVEW TGVNQLTAWR FGMASALGLT IPADLYRTVG PQVVAWSARA PMIPPAERLD AAMTAARLGV FSNSALVDLY AQAADESGDF SSDTPAGRLR LCYAGDDAGA RLSAMRGFWS GEGQGDGKQV DRYAGLILTA RAAARIAPDS DHVSDAAGLI GSMMSAGLDR KAAAWAPIVS GMSAGKGDDA WAILAVGTPR AVVDVSADRL SAVADRWSAE NPQKLRLLLA ALAGLDRLQT EEQMRLLQEY QVGFDNRSNW GRLLLQAADR KEPATVALLV AVGMQKTGWS GLSSAMFATM IRALHDVGLD GEARMIAAEA MTRL
|
| |