Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0007 |
Symbol | aroB |
ID | 5200779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 6840 |
End bp | 7949 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640579544 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_001260518 |
Protein GI | 148552936 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.313295 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGTAC GGGTTTCGCT GGGCGACCGC AGCTACGACA TCACCATCGA GAACGGCGCG CTCGACCGGG CGGGCGAGCT GCTGGCCCCC TATGCCGCGC GGGGCCGCTT CATCGTCGTC ACCGATCGCA ACATCGTCCC CAACCAGCTC TACCGGCTGG AGACGGCGCT GACCGCCGCC GGCATCGCCA GCGCGGTCGA GGTGCTGCCG CCGGGCGAAT CGACCAAGAG CTGGGTGATG CTCGAGAAGC TGACCGACGC GCTGCTGAGC TACGGGGTCG AGCGCGGCGA CACGATCGTC GCGCTGGGCG GCGGGGTGAT CGGCGACCTG GTCGGCTTCG CGGCGGCGAT CCTCAAGCGC GGCTGCCGCT TCGTGCAGGT GCCGACCACG CTGCTCGCCC AGGTCGATTC CTCGGTCGGC GGCAAGACCG CGATCAACAG CAAGGCCGGC AAGAACCTGA TCGGCGCCTT CTACCAGCCC GCCCATGTCC TGATCGACCC GACCACGCTC GACACGCTGC CCCCGCGCGA GACCCGCGCC GGCTATGCCG AGGTCGTCAA ATACGGCCTG ATCGACGACG CCGCCTTCTT CGACTGGTGC GAGGCGAACG GACCGAAGCT GCTGGCCGGC GATCCCGAGG CGCGCGCCGT CGCGATCGCC AAGAGCGTCG GCGCCAAGGC CCGCATCGTC GGCGAGGACG AGCGCGAGAC CAGCGGCCGT CGCGCGCTGC TCAACCTCGG CCACACCTTC GGCCATGCGC TGGAGGCGGA GACCGGCTTC TCCGACCGGC TGCTCCATGG CGAGGCGGTC GCCGCCGGCA TGGCGCTCGC CTTCCGCTTC TCGGCGGCGC AGGGCCTGTG CCCGCCCGAG GATGCCCGCC GCGTGACCGC GCACATCGCG GCCACCGGCC TGCCCGCGAC GCTCCAGGCC GCCGGCGTCG ATGCCGGCGG CGCGACGCTG GTCGGCCATA TGCAGCACGA CAAGAAGATG GAGGGCGGCC GCCTGCCCTT CCTGCTCGCG CGCGGCATCG GCGAGACCTT CCTCGACAAG CAGGTCGACC TCGCCGCGGT CGAAGCCTTC CTCGACGCCG AGCGCACCGC TACGGCCTGA
|
Protein sequence | MTVRVSLGDR SYDITIENGA LDRAGELLAP YAARGRFIVV TDRNIVPNQL YRLETALTAA GIASAVEVLP PGESTKSWVM LEKLTDALLS YGVERGDTIV ALGGGVIGDL VGFAAAILKR GCRFVQVPTT LLAQVDSSVG GKTAINSKAG KNLIGAFYQP AHVLIDPTTL DTLPPRETRA GYAEVVKYGL IDDAAFFDWC EANGPKLLAG DPEARAVAIA KSVGAKARIV GEDERETSGR RALLNLGHTF GHALEAETGF SDRLLHGEAV AAGMALAFRF SAAQGLCPPE DARRVTAHIA ATGLPATLQA AGVDAGGATL VGHMQHDKKM EGGRLPFLLA RGIGETFLDK QVDLAAVEAF LDAERTATA
|
| |