Gene Swit_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0007 
SymbolaroB 
ID5200779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp6840 
End bp7949 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content72% 
IMG OID640579544 
Product3-dehydroquinate synthase 
Protein accessionYP_001260518 
Protein GI148552936 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.313295 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTAC GGGTTTCGCT GGGCGACCGC AGCTACGACA TCACCATCGA GAACGGCGCG 
CTCGACCGGG CGGGCGAGCT GCTGGCCCCC TATGCCGCGC GGGGCCGCTT CATCGTCGTC
ACCGATCGCA ACATCGTCCC CAACCAGCTC TACCGGCTGG AGACGGCGCT GACCGCCGCC
GGCATCGCCA GCGCGGTCGA GGTGCTGCCG CCGGGCGAAT CGACCAAGAG CTGGGTGATG
CTCGAGAAGC TGACCGACGC GCTGCTGAGC TACGGGGTCG AGCGCGGCGA CACGATCGTC
GCGCTGGGCG GCGGGGTGAT CGGCGACCTG GTCGGCTTCG CGGCGGCGAT CCTCAAGCGC
GGCTGCCGCT TCGTGCAGGT GCCGACCACG CTGCTCGCCC AGGTCGATTC CTCGGTCGGC
GGCAAGACCG CGATCAACAG CAAGGCCGGC AAGAACCTGA TCGGCGCCTT CTACCAGCCC
GCCCATGTCC TGATCGACCC GACCACGCTC GACACGCTGC CCCCGCGCGA GACCCGCGCC
GGCTATGCCG AGGTCGTCAA ATACGGCCTG ATCGACGACG CCGCCTTCTT CGACTGGTGC
GAGGCGAACG GACCGAAGCT GCTGGCCGGC GATCCCGAGG CGCGCGCCGT CGCGATCGCC
AAGAGCGTCG GCGCCAAGGC CCGCATCGTC GGCGAGGACG AGCGCGAGAC CAGCGGCCGT
CGCGCGCTGC TCAACCTCGG CCACACCTTC GGCCATGCGC TGGAGGCGGA GACCGGCTTC
TCCGACCGGC TGCTCCATGG CGAGGCGGTC GCCGCCGGCA TGGCGCTCGC CTTCCGCTTC
TCGGCGGCGC AGGGCCTGTG CCCGCCCGAG GATGCCCGCC GCGTGACCGC GCACATCGCG
GCCACCGGCC TGCCCGCGAC GCTCCAGGCC GCCGGCGTCG ATGCCGGCGG CGCGACGCTG
GTCGGCCATA TGCAGCACGA CAAGAAGATG GAGGGCGGCC GCCTGCCCTT CCTGCTCGCG
CGCGGCATCG GCGAGACCTT CCTCGACAAG CAGGTCGACC TCGCCGCGGT CGAAGCCTTC
CTCGACGCCG AGCGCACCGC TACGGCCTGA
 
Protein sequence
MTVRVSLGDR SYDITIENGA LDRAGELLAP YAARGRFIVV TDRNIVPNQL YRLETALTAA 
GIASAVEVLP PGESTKSWVM LEKLTDALLS YGVERGDTIV ALGGGVIGDL VGFAAAILKR
GCRFVQVPTT LLAQVDSSVG GKTAINSKAG KNLIGAFYQP AHVLIDPTTL DTLPPRETRA
GYAEVVKYGL IDDAAFFDWC EANGPKLLAG DPEARAVAIA KSVGAKARIV GEDERETSGR
RALLNLGHTF GHALEAETGF SDRLLHGEAV AAGMALAFRF SAAQGLCPPE DARRVTAHIA
ATGLPATLQA AGVDAGGATL VGHMQHDKKM EGGRLPFLLA RGIGETFLDK QVDLAAVEAF
LDAERTATA