Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5097 |
Symbol | |
ID | 5196000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | - |
Start bp | 208347 |
End bp | 209207 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640579525 |
Product | integrase catalytic subunit |
Protein accession | YP_001260473 |
Protein GI | 148551043 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 67 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.545434 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGTGAGG TGCTGGATGT GTCCGAGCGA CGGGTGTGCC GCGTCCTCGG GCAGCATCGG TCGACGCAGC GCAAAGTGCC GTGTGGGGCA GATGACGAGG AGGCGCTGAC CGACGACATC GTCGCGCTGG CCAGGCAGTA CGGGCGCTAC GGCTATCGCC GGGTAACCGC ACTGCTGCAT GCGGCCGGCT GGTCGGTGAA CCACAAACGG GTGGAACGGA TCTGGCGACG CGAGGGGCTG AAGGTGCCTC AGCGACAGCC GAAACGTGGT CGGCTGTGGT TGAACGATGG CTCGTGTATT CGGCTGCGGC CGGAATATCC CGGGCACATC TGGGCGTACG ACTTTGTCGA GGCACGGACG CACGACGGGC GCAAGTTCCG CATCCTCACG ATCATCGACG AGGCCAGCCG CGAGTGCCTG GCGCTGGTGG TCGCCCGTCA GCTTCGCCAC GAAGATGTGC TGGCGGCCCT GGCCGAGCTG TTCATTGACC GGGGCCCGCC TGACCATATC AGATCGGACA ACGGCAGCGA GTTCATCGCC ACCGCAGTCC AGAAATGGCT TGGGCAGATC GGCGTGAACA CGCTCTACAT CACGCCAGGC TCGCCATGGG AGAACGGCTA CAACGAGAGC TTCAATGGCT CGCTGCGTGA CGAGCTGCTT AACGGAGAGA TCTTCTACAG CCTCGCCGAG GCCAGAGTGC TGATCGAGGC GTGGCGGCGC CACTACAACA CCATCCGGCC ACATAGCAGC CTGGGCTATC GCCCACCCGC ACCAGAAGCG GCGACGCCGC CATTGCCGGC CTCCGGTTCC GCTTCGCTCC ACCTGCGCCC GGCAATGGCG GCGGAGACGA CAATGCACTA A
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Protein sequence | MREVLDVSER RVCRVLGQHR STQRKVPCGA DDEEALTDDI VALARQYGRY GYRRVTALLH AAGWSVNHKR VERIWRREGL KVPQRQPKRG RLWLNDGSCI RLRPEYPGHI WAYDFVEART HDGRKFRILT IIDEASRECL ALVVARQLRH EDVLAALAEL FIDRGPPDHI RSDNGSEFIA TAVQKWLGQI GVNTLYITPG SPWENGYNES FNGSLRDELL NGEIFYSLAE ARVLIEAWRR HYNTIRPHSS LGYRPPAPEA ATPPLPASGS ASLHLRPAMA AETTMH
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