| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5067 |
|---|
| Symbol | |
|---|
| ID | 5195938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009508 |
|---|
| Strand | - |
|---|
| Start bp | 181099 |
|---|
| End bp | 184008 |
|---|
| Gene Length | 2910 bp |
|---|
| Protein Length | 969 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640579499 |
|---|
| Product | transposase Tn3 family protein |
|---|
| Protein accession | YP_001260447 |
|---|
| Protein GI | 148551017 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.0388929 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTG GCGTTTCGAG TGGGGATCTG ATCGGCTCCT GGAGCCTGAG TTTTTCGGAC
ATCGCGTTCG TGACCGGCAA AGCGGAGACG GCACGACTGG GATTGGCGGT TCAGCTTAGA
TTTTTCGCCG GGCATGGCTT CTTTGTGCCG GATCATGCGT CGATACCCTC CGACGGTGTC
TTGTATCTGG CGGAGCAACT TGGTCTCGAT GCCAAATCCG TGAACCACTA TGATTTTTCC
GGGCGCACCG CCCGCCGGCA TTGCGCGGAG ATTTTGCGGC ATCTCGGGTT CCGCCGTATG
ACGCAGACGG ATCGCAGGGC GTTGTCGAGG TGGATTTCCG ACGATCTTTG TGCGGGCGGG
CAGCCGATCA ATGCCATGCT CGAGCATGTT TTCCTGTGGT GCCGCGACCG CCGTATCTAT
GGGCCGTCGC GCAAGGAGCT GGAACGCCTC GTCCGTTCGC AACGACACCT CTATCTGGAG
GCCCTGTTGG CCCGAGTCCG CGATCGGCTT GCGCCGGATG CGGTCGCCTT GCTGGAAGCC
TCGCTCGCCG ATCCCGATGG CCCGACCGGC TTCAACACGA TGAAGGGGGA TGCAGGTCAG
GCGACGCTCG AAAACATTCT TGGCGTGACC GCCAAACTCG CCTTTATCCA ACGGCTTGCT
CTTCCCCGAG ATTTCCTATC GGTCACGGGC AAGGCATGGG TCGATCAGAT CGTTCGCCGG
GTTGCCGGCG AGAAAGCCTC GGAGATGCGC CGGCATGTAC CGGCGCGCCA GCTCGGGCTC
TATGCCGTTT ATCTGATGGC GCGGGAAGCT CAGCTTACGG ATGCGATGGT CGACCTGCTG
ATCGAGACGG TCCATAAGAT CGGATCGCGC TCGAAACGCA AGGTGGTGGG CGATATCGCG
AAAGACATCG AGCGGGTCTA TGGCAAGGAG CGACTCCTGG TCGAGATTGC CAGCGCTTCG
ATCGACGATC CATCCGGGCG CATCTGCGAT GTCATTTTCC CAATCGCCGG CAAGGACAAA
CTGGCGGCGA TCATCAAGGA AAGCCAGGCA AAGGGCGCCT TGGATCGGCG GATCTACAAG
GTGATGCGGA GGTCATGGGC CAATCATTAT CGCCGTATGC TGCCAAGCCT GCTTTCGGCA
CTGGAGTTCC GGTCGAACAA CGCCGTGTGG CGTCCGGTGC TGGCGGCCCT GGACTGGATC
AGAAGCAAAG TGGATGATGG ATGCCGCTAC GTGCCGCCGC ACGCAGTGCC GGTCGACGAG
GTCATTCCGG CGAGATGGCG CAGTTCCGTC ATTGATGAAG AGGGGCGCGT AAACCGGATC
AGTTATGAGC TTTGTGTCCT CGCGCAACTG CGCGATCGCA TCCGTTCTAA GGAAATCTGG
GTTGTCGGGG CGGACCGATA CCGCAATCCC GATGACGATC TTCCCAAGGA CTTCGATGCG
CGGCGAGAAG CATATTACAC AGGATTGAAC CTGACGGCGG ATGCGCGTGC ATTTTCAAGC
GCCATCCGGG AAGAGCTTGC TCAGGAACTG TTGCTCCTCA ATGCCAATAT TCCCCGGAAC
GACAAGGTTC GGCTGCTGTG GCGCGGCGAG AACCGTATAT CTCTCACCCC GTTCAAACCC
TTGCCCGAAC CCAGGGGTCT CGCCTCGATC AAGACCGAGA TCGGCCAACG CTGGCCGATG
ACCGGGCTGC TCGACGTACT GAAGGAGGCT GCCCTTGATA CGGGACTTCT CGAAGCGTTC
GAAACATCGG CCTCGCGTGT TGCACTGCCG AAAACCGCGC TGGATCAACG TCTCCTGCTA
TGCCTCTACG GCCTGGGAAC GAATGCCGGG CTCAAGCGGA TCGCCGGCGC CACCCCCGAT
GTCAGCTATG AAGAGCTGCT GCATGTCCAT CGCCGCTTCG TTCATGCCGC GGCGCTCAAG
GAGGCGTGTG CCAGGGTTGC GAATGCGACC CTGGCAATCC GCAATGCTGC AGTCTGGGGG
GACGCCGGCA CGGCCTGTGC GTCAGATTCC ACAAAGTTCG GAGCCTGGGA TCGCAACCTG
ATGACGGAAT GGCATGCGCG TTATGGTGGA CGGGGCGTCA TGATCTACTG GCATGTCGAA
CGACGCGCGA CATGCGTCTA TTCCCAGCTC AAGCGCTGCT CTTCCTCCGA GGTCGCCTCC
ATGATCGAGG GCGTGCTGCG CCATTGCACC GACATGGAAA TCCAGCGACA ATATGTTGAT
AGTCATGGCC AAAGCGCGGT TGGCTTTGCA TTTTGCCGGC TTCTCGGATT TGAGCTTGCA
CCCCGCCTGA AAGCGATCGC TCGCCAGAAG CTGGCTCTTC CCGATGTCGG CATGCGAACG
CGGCTTCCCC ACTTGCAGCC GATCCTCTCC AGTCCGATCA ACTGGGATGA GATCGAGCAG
CAATATGACG AGATGGTCAA ATATGCAGCC GCGATGCAGA CAAAAACCGC CGACCCGGAG
GCGATCCTGC GCCGGTTTAG CCGCTCCGAG GTGATGCACC CGACCTACAA GGCGTTGAGT
GAGCTGGGCC GCGCGGTCAA GACGATCTTC CTGTGCCGGT ATCTGCGCGA GGAGTCCTTC
CGCCGCGAAA TTCATGAAGG CCTGAATGTC GTTGAAAACT GGAACAGTGC CAATGGGTTC
GTTTTCTTCG GCAAGGGCGG CGAGATCGCC ACTAACCGCA TCGATGAGCA GCAGCTCTCG
GTCCTGGCGC TACATTTGCT GCAAGCGTCG CTTGTCTATG TGAACACCCG AATGCTTCAG
AGCGTGCTGG TGGAACCGAA ATGGACGGGC CGGATGACGC CGGATGATTA TCGCGGCCTC
ACACCGCTGA TTTACAGCCA CGTCAATCCT TATGGCCGCT TCGACCTCGA TCTGAATAGC
CGGATCGATT TTGGGCGGCT TGCTGCCTGA
|
|---|
| Protein sequence | MSLGVSSGDL IGSWSLSFSD IAFVTGKAET ARLGLAVQLR FFAGHGFFVP DHASIPSDGV
LYLAEQLGLD AKSVNHYDFS GRTARRHCAE ILRHLGFRRM TQTDRRALSR WISDDLCAGG
QPINAMLEHV FLWCRDRRIY GPSRKELERL VRSQRHLYLE ALLARVRDRL APDAVALLEA
SLADPDGPTG FNTMKGDAGQ ATLENILGVT AKLAFIQRLA LPRDFLSVTG KAWVDQIVRR
VAGEKASEMR RHVPARQLGL YAVYLMAREA QLTDAMVDLL IETVHKIGSR SKRKVVGDIA
KDIERVYGKE RLLVEIASAS IDDPSGRICD VIFPIAGKDK LAAIIKESQA KGALDRRIYK
VMRRSWANHY RRMLPSLLSA LEFRSNNAVW RPVLAALDWI RSKVDDGCRY VPPHAVPVDE
VIPARWRSSV IDEEGRVNRI SYELCVLAQL RDRIRSKEIW VVGADRYRNP DDDLPKDFDA
RREAYYTGLN LTADARAFSS AIREELAQEL LLLNANIPRN DKVRLLWRGE NRISLTPFKP
LPEPRGLASI KTEIGQRWPM TGLLDVLKEA ALDTGLLEAF ETSASRVALP KTALDQRLLL
CLYGLGTNAG LKRIAGATPD VSYEELLHVH RRFVHAAALK EACARVANAT LAIRNAAVWG
DAGTACASDS TKFGAWDRNL MTEWHARYGG RGVMIYWHVE RRATCVYSQL KRCSSSEVAS
MIEGVLRHCT DMEIQRQYVD SHGQSAVGFA FCRLLGFELA PRLKAIARQK LALPDVGMRT
RLPHLQPILS SPINWDEIEQ QYDEMVKYAA AMQTKTADPE AILRRFSRSE VMHPTYKALS
ELGRAVKTIF LCRYLREESF RREIHEGLNV VENWNSANGF VFFGKGGEIA TNRIDEQQLS
VLALHLLQAS LVYVNTRMLQ SVLVEPKWTG RMTPDDYRGL TPLIYSHVNP YGRFDLDLNS
RIDFGRLAA
|
|---|
| |