Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5045 |
Symbol | |
ID | 5195899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | - |
Start bp | 157564 |
End bp | 159744 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640579477 |
Product | TonB-dependent receptor |
Protein accession | YP_001260425 |
Protein GI | 148550995 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 0.0895856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTATC ATAAATATTG TATCGCAACG ATGGCTGCGC CTCTCGCGAT GTACGCCGCT CCGTCCTTCG CACAAGGGCA GGCGGTCGAG CCGCCACAGG AACAGGCAAC GTCCGACACC CAGGTCGAGG AGATCATCGT CACCGCGCAA CGCCGGGGCG AAAATCTTCA GAATGTGCCG ATCGCCATCA CCGCCCTGTC GGCGTCGCGT CTGCAGGCGA CAGGCGTCCT GACTGCGCAG GATCTTTCCA CGGTCACGCC GTCGCTGCAG ATGCCGGCAC AGGCGGGCTA TCTGCTGCCC CGACTTCGTG GCATCGGCAC GAGCGTCATC GGTCCGGGCA TTGAAAATAC CGTGGCCCTG TATGTGGACG GTGTCTACCA GGCATCGTCG CCCGCATCGA TATTCTCGCT GACCGGGATC GAGCGGATCG AGGTGCTCAA GGGGCCGCAG GGGACGTTGT TCGGACGCAA CGCCACCGGC GGACTGATCC AGATCGTGAC GCGCGAGCCC GAACCCGGTT TCAGCGGAAA CGGGGCGATC AGCTACGGTA ATTACGACAC GGTCTCTGCC GACGCCTATA TCGCCGGTGG CTCCGACACG GTCCGTGTTT CGCTTGCCGG GCGCTATGCG CATCAGGGGG ACGGTTTCGG TTACAATTTC GCCCGTGGCG AAGATGCCAA TACGGTGAGG GACGATCTGG CGCTTCGCGG CAAGATGGTC TTCCTTCCCG CCGATGGTAC GAAGGTGACT TTCAGCGCGG ACTATGCACG CACAAGGGGC AGCTATCCAG AAGCCCGCAT GTTCCCCGGC GCTCCCGCGC GCAATGATCC CAATCCGCCG TCCGGTCCCT TCGACACGAA CAACAACACG CAGTCGATCA AGAGCCTGGA TGCGGGCGGT GCCAGCCTGC GCGTCGATCA GGATGTCGGC GCCATCGGGT TGACCAGTAT TTCGGCCTAT CGCCGTTCTA CATTCCATTC CGTCGTGGAT CTCGACCGTA CTCCCGCCAA TCTGGTGTTC ATCGACAACA CTCAGCAGGA CCGTCAGTTC AGCCAGGAGT TGCAGCTTCA TTCGACAAGG GGGTCGACGA TCGACTGGCT GGTCGGCGGC TATTATTTCT GGTCGAAAAG CGGCTTCGAG CCCAGCATCC TGACCAATTA TCCGCCGACC GCTCCGGCGC CACGAACAGT GACGGTTGAC GGCAATCAGT CGACGGAGTC GCTGGCTGCC TTCGGACAGC TGACGGTTCC GTTGACCGAC CAGCTTCGGG CGACGGCAGG TCTGCGCTAC ACCACGGAGA AGCGCAGCAT CGACACCGGC AGCATCGTGG CGCTGATCTC GGGGCCGACG CTGGCGACGG CGGCGCAGGA CGACAGCCGA CGCTACAACA AGCTGACCTG GCGCGCGGCG CTCGATTATC AGCCGACACC CGACGTGTTG CTGTATCTGT CCTACAACCG GGGCTTCAAG AGTGGCGGCT TCAACGTCAC CACACCGGGC GCGGCGCCCT ATGAGCCCGA GGTGTTGGAC GCCTTCGAAT TCGGAGCGAA ACTGGATTTG TTCGATCGTC GGCTGCGGAT CAATTCGGCG GTCTTCTATT ATGACTATTC CAACATTCAG GTCGCGTATT TCATCGGCGC TTCGGGCGGC ACGCTTGGTA TCCGCAACGG GTCGTCCGCG ACGGTCTACG GGGCGGATGT CGACCTTTCC CTGATCCTGG CGCCGGGGTT GACGCTACAG GGTGGGGCCA GCCTCATTCA TGACCGCTTC GGCGATTTTC CCAACGCGGT GATCAACACC CCGCTTCCGG GCGGCGGCAA CGCCAGCGGC GTTTTCCAGG CCAAGGGGAA CCGGCTGCCG TTCACGTCGG ATTTTTCGGG AAACATCGGG CTGGACTATG CGCGTGAGCT GTCTTCCGGA AAGCTGACCG CCAACGTCAC GCTCTATTAT AATGACGGCT ATTATCCGGA AGCAGATAAT ATCCGGCGCG TCGACGGCTA CGCCAAGCTT AACGCATCTT TGGGATGGCG GTTCGGCGAA AGCGGCGTGG GCGTACGCAT CTGGGGGCGC AACCTGACCA ACAAGGCCAT TCCCACGTTC ATCGGCTCCG TCGCCGCCGG TACGGGCATC ACCTACGAGC CGCCGCGCAC CTATGGCGCG TCGCTGACCG TGGACTTTTG A
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Protein sequence | MNYHKYCIAT MAAPLAMYAA PSFAQGQAVE PPQEQATSDT QVEEIIVTAQ RRGENLQNVP IAITALSASR LQATGVLTAQ DLSTVTPSLQ MPAQAGYLLP RLRGIGTSVI GPGIENTVAL YVDGVYQASS PASIFSLTGI ERIEVLKGPQ GTLFGRNATG GLIQIVTREP EPGFSGNGAI SYGNYDTVSA DAYIAGGSDT VRVSLAGRYA HQGDGFGYNF ARGEDANTVR DDLALRGKMV FLPADGTKVT FSADYARTRG SYPEARMFPG APARNDPNPP SGPFDTNNNT QSIKSLDAGG ASLRVDQDVG AIGLTSISAY RRSTFHSVVD LDRTPANLVF IDNTQQDRQF SQELQLHSTR GSTIDWLVGG YYFWSKSGFE PSILTNYPPT APAPRTVTVD GNQSTESLAA FGQLTVPLTD QLRATAGLRY TTEKRSIDTG SIVALISGPT LATAAQDDSR RYNKLTWRAA LDYQPTPDVL LYLSYNRGFK SGGFNVTTPG AAPYEPEVLD AFEFGAKLDL FDRRLRINSA VFYYDYSNIQ VAYFIGASGG TLGIRNGSSA TVYGADVDLS LILAPGLTLQ GGASLIHDRF GDFPNAVINT PLPGGGNASG VFQAKGNRLP FTSDFSGNIG LDYARELSSG KLTANVTLYY NDGYYPEADN IRRVDGYAKL NASLGWRFGE SGVGVRIWGR NLTNKAIPTF IGSVAAGTGI TYEPPRTYGA SLTVDF
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