Gene Swit_5039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_5039 
Symbol 
ID5196035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009508 
Strand
Start bp151271 
End bp152503 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content65% 
IMG OID640579471 
Productmajor facilitator transporter 
Protein accessionYP_001260419 
Protein GI148550989 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value0.582294 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCCG AGAACCGCCG CTACGAACGA ATCGCGACCG CCGTGCTGGG ACTGACGTTC 
GGCATCGTCT TCTTCGACCG CAACGCGCTG AATTTCCTGA TGCCGTTCAT CCTGCGCGAC
ATTGCGTTGA CCAACACGCA GATCGGCCTC GCCGCCTCCG GGCTGGCTTT GACATGGGCA
TTGTCGGGCA TGATGATCGG CAGGCTTTCG GACCGGATCG GTCGACGCAA GCCGCTCCTC
ATCGGCGCCG TCCTGGCCTT TTCAGCCTCC TCCTTCGTGA CGGGCATCAC CTGGTCGTTC
GCCACGCTGC TGGGCGCGCG CCTGCTCATG GGCCTTGCCG AAGGGCCGGT GCTGCCGATC
TCGCAGACGC TGATGGCCGC TGCCTCGTCG CCGGAACGGC GCGGTCGCAA CATGGGCCTG
ATGCAGAATG TACTCAGCAA CCTGATGGGC AGCCTCGTCG CGCCGCTCGT CGTCGTCGCG
CTGGCGACCA GCTATGGCTG GCGGTACGCC TTCTTTCTGA CCGCCCTCCC CGGCTTCGTC
GCGGCTGCGC TGATCTGGCG CTACATCGAG GAACCGGAAC CGCGTGCGCG ACAGGCTGCG
GATCGTTCAG ACCAACAGGC CTCGGTGCGC GATGTGCTGC GCCATCGCAA CATCAGGCTC
TGCCTCTTCA TCAGTCCGCT GATCGTGGGC TGGATGATCA GTGGATGGGT GTTCCTGCCC
ATCTATTTCA CCTCCGTCGC CGGATTCACG CCGACGCAGA TGAGCGCGCT GCTCAGCGTT
CTGGGCCTTA CGGGAGCGAT CGCTGGTTAT CTCGTACCGG CACTTTCCGA CCGTTTCGGA
CGGCGGCTGG TGGTGGCAGC CGGATGCCTG CTCGGCATCC TGACCCCTCT GGCCGCCATG
TGGGGCGTGC ATTCCGGCGC TGTAGCGATA GCCGTGCTGG TCGCGACCGG GTGGATGGCA
GGCGGCACCA TCTCGATCGT GATGGCGACG ATCCCGGCAG AAAGCAGCGA CGCCGGACAG
GTCACCACCG CGATGGCGCT CGTCATGGGA TCTGGCGAAC TGTTCGGCGG CACCCTGGCC
CCGACCATCG TCGGCTGGAC CATGGACCGT TGGGGCCCGA CGGCACCCTT GATGGGTCAG
GTGATCATGA TCGCCAGCGC GAGCGTTCTG GCGCTGTTCC TGCGCAATAC GACATCACGC
CGCATCGCGC TGGACAGCCA CCACGCCGCT TGA
 
Protein sequence
MEAENRRYER IATAVLGLTF GIVFFDRNAL NFLMPFILRD IALTNTQIGL AASGLALTWA 
LSGMMIGRLS DRIGRRKPLL IGAVLAFSAS SFVTGITWSF ATLLGARLLM GLAEGPVLPI
SQTLMAAASS PERRGRNMGL MQNVLSNLMG SLVAPLVVVA LATSYGWRYA FFLTALPGFV
AAALIWRYIE EPEPRARQAA DRSDQQASVR DVLRHRNIRL CLFISPLIVG WMISGWVFLP
IYFTSVAGFT PTQMSALLSV LGLTGAIAGY LVPALSDRFG RRLVVAAGCL LGILTPLAAM
WGVHSGAVAI AVLVATGWMA GGTISIVMAT IPAESSDAGQ VTTAMALVMG SGELFGGTLA
PTIVGWTMDR WGPTAPLMGQ VIMIASASVL ALFLRNTTSR RIALDSHHAA