Gene Swit_5034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_5034 
Symbol 
ID5195919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009508 
Strand
Start bp147749 
End bp148486 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content66% 
IMG OID640579466 
Productalpha/beta hydrolase fold 
Protein accessionYP_001260414 
Protein GI148550984 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones55 
Plasmid unclonability p-value0.246074 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.671643 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAAAA AACCAACCCT GATCCTGCTG CCCGGATCGC TGTGCGACGC GACAATGTGG 
CGCGCGCAGG TCGATGCGCT GGAGGATATC TGCGTTCCGC TGGTTGTCGA TCTGGGGGGT
TTTGACACCA TAGCCGCCAT GGCGGATCAT GTCCTTGAAT ACGCTCCGGA CCACAGCTTC
GCTCTGGCGG GCTTTTCGCT TGGAGGCTTC GCGGCACTCG AGGTGGTGCG GCGAGCGCCC
GACAGGGTCG CCCGGCTGAC TCTGCTCGGC ACCTCGGCCC GGCCTGACAA ACCTGAAAAC
GCGCCGCGCC GGCTGGCGAA TATCGCGGCT TTCGAGGAAG ATGCCGATCC ACCCCTGCGC
GCCTTCGCCG ATCTGACGCG CGGCTCCACC ACGCCGGAGG GCGTGTCCGC CGCTGTGATC
GCTTCGATGC GGCACCATGG TCCGGCCAGC TATGGCCCCC ACCAGCGGGC GATGATGACG
CGTCCCGATG CGCGACCGCA TCTGTCCGAC ATTGCGTGCC CGACACTGGT GCTGTGCGGC
GGCGAGGATC GGGCCACGCC GCCGGAGGGC AATCGCGAGA TTGCCGAAAC CATTCCCGGC
GCAACCTATG TCGAACTGGC CGAAGTGGGC CACATGGTGA CGCTGGAGGC CCCTGACGCC
GTCAGCGCCG CCATGCGGAA CTGGCTGCTT TTCCCCGAAG CGTCGACCAT CCACGGAGGC
CCAGGAAGCC ATGAATAA
 
Protein sequence
MVKKPTLILL PGSLCDATMW RAQVDALEDI CVPLVVDLGG FDTIAAMADH VLEYAPDHSF 
ALAGFSLGGF AALEVVRRAP DRVARLTLLG TSARPDKPEN APRRLANIAA FEEDADPPLR
AFADLTRGST TPEGVSAAVI ASMRHHGPAS YGPHQRAMMT RPDARPHLSD IACPTLVLCG
GEDRATPPEG NREIAETIPG ATYVELAEVG HMVTLEAPDA VSAAMRNWLL FPEASTIHGG
PGSHE