| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5027 |
|---|
| Symbol | |
|---|
| ID | 5196047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009508 |
|---|
| Strand | + |
|---|
| Start bp | 142570 |
|---|
| End bp | 143028 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640579459 |
|---|
| Product | N-acyl-L-homoserine lactone synthetase-like protein |
|---|
| Protein accession | YP_001260407 |
|---|
| Protein GI | 148550977 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 60 |
|---|
| Plasmid unclonability p-value | 0.42279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.634869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCTT CACATGGCGG TCTGAGTGGA CGGCGTTGGC ATCTGCGCGC TGGATCTCGT
TACGCGCGAC GGGCGTGTGC AGGCGGGCGG GACCTGCCGG TCCTGGTCGA GCGCTACGAG
ATCGACCAGT TCGACGACGC GCATGCGCGC TACCTGATCC TCGCCGATGC CGACCAGAGC
CACCTCGCTT CGGCACGGCT GTTGCCGTCG CAGCGGCGGC ACCTGCTGGC CGACCTGTTC
GCCGACCTGT GCGACGTGGC CCCGCCCGCC GGCCCCGACA TCTGGGAGAT CACACGCTGG
CGCCGCGGCA CCTCGGGAAC AGGCCATCAA CACTCCTTGC GCCGCTCCGC AGCGGCCAGG
TGCGTTACGC AGATGTCCAA TATATGTGTC GGAATCGAAA TTCTAAGCCG CATGCCGCGA
CGCCTTGCCG CTGAGCGATC ACCCTCAGCA AACCTATGA
|
|---|
| Protein sequence | MRSSHGGLSG RRWHLRAGSR YARRACAGGR DLPVLVERYE IDQFDDAHAR YLILADADQS
HLASARLLPS QRRHLLADLF ADLCDVAPPA GPDIWEITRW RRGTSGTGHQ HSLRRSAAAR
CVTQMSNICV GIEILSRMPR RLAAERSPSA NL
|
|---|
| |