| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5023 |
|---|
| Symbol | |
|---|
| ID | 5196034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009508 |
|---|
| Strand | - |
|---|
| Start bp | 138414 |
|---|
| End bp | 139124 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640579455 |
|---|
| Product | 3-oxoacid CoA-transferase, A subunit |
|---|
| Protein accession | YP_001260403 |
|---|
| Protein GI | 148550973 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAA TATTTGACAG TCCCGCCGCC GCGTTGGACG AACTCCTGTT CGATGGCATG
TCGATCATGT CCGGCGGCTT TGGTCTGTCG GGTAATCCCG AAAGCCTGAT CCCGGAAATC
CGCGCGAGCG GCGTGAAAGA CCTGACGATC ATTTCGAACA ATGCGGGCGC CGACGGCTTT
GGCCTGTGGA TGCTGCTGGA AAGCCGGCAG GTTAAGAAGA TGATCTCCTC CTATGTCGGG
GAGAACAAAC TGTTCGAGAG CCAGTATCTG TCGGGCGACC TCGAACTGGA ACTGAACCCG
CAGGGGACGC TGGCCGAACG CATTCGCGCT GGCGGCGCAG GCATTCCGGC TTTCTACACC
AAGACCGGGG TAGGCACCGT CGTCGCTGAA GGAAAACCGG TCGAGACGTT CGAGGGCGAG
GAGTATGTCC GCGAAACCTG GCTGCGCGCA GACCTGTCGA TCATCAAGGC GTGGCGGGCG
GACGCCGCAG GCAATCTGAT GTTCCGCAAG ACCGCGCGAA ACTTCAATCC GAACATGGCG
ACAGCGGGTA AGGTTACCGT CGTGGAGGTC GAGGAAATCG TGGCCGAAGG CAGTTTCGAC
CCTGACTGCA TCCATACGCC CGGTATCTAT GTCGACCGCA TCGTACTGAG TACGATCAAC
GAAAAGCGGA TCGAAAAGCT GACCACCCGT CCGAAGGAAA TTGCGGCATG A
|
|---|
| Protein sequence | MQKIFDSPAA ALDELLFDGM SIMSGGFGLS GNPESLIPEI RASGVKDLTI ISNNAGADGF
GLWMLLESRQ VKKMISSYVG ENKLFESQYL SGDLELELNP QGTLAERIRA GGAGIPAFYT
KTGVGTVVAE GKPVETFEGE EYVRETWLRA DLSIIKAWRA DAAGNLMFRK TARNFNPNMA
TAGKVTVVEV EEIVAEGSFD PDCIHTPGIY VDRIVLSTIN EKRIEKLTTR PKEIAA
|
|---|
| |