| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5004 |
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| Symbol | |
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| ID | 5195923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 121409 |
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| End bp | 122098 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640579439 |
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| Product | VirB8 family protein |
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| Protein accession | YP_001260387 |
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| Protein GI | 148550957 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 0.04145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.518843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAACC AGACCGAAGG CGTGCCGGCA AAAGACGCTG AACTCTATTT CGGGCATGCC
CGATCGTGGG ATCAGGACCG TCAGCGCAAA TCGTTACGAT CCGAACGCAT CGCCTGGGTC
GTGGCCGGCC TGGGGCTGCT TGCCGCGACC GCGGAGGGCT TCGCACTCGC GGGCCTGGCC
CCGCTGAAAA CGGTCATGCC GTACATCATT CGCGTCAATC AGACCACAGG CGCGGTCGAT
GTGCAGACCA CCCTCACCCA GAAGCCGATG CGCTATGACG AGGCGGTCAC GAAATTCTTC
CTCGCACAAT ATGTCAGGGC GAGAGAGAGC TGGTTGCCGG CGGCGGCCGA GGAGAATTTT
CGCGCTGTCA CAATCCTGTC CGAACCAGGC GAGCAGCAGC GCTGGGGCCG GTTTTTCAAC
TCGAACAACG CCGCGAGCCC ACAGGTCGTC TGGGGCAAGG GTGCGGTCGT CCAGGCCCGC
GTGCGCAATA TCGCCTTCAT CAACGATCGT GTGGCCAATG TCCGTTTCAC GCGGACAGTG
CAGACCGACA CCGATACGCA GAGCAGCGAC TGGATCGCAA CGGTCACCTT CCGGTACACG
AATGCGCCGA TGGCGGAGGG CGATCGCTAT CGCAACCCAT TGGGGTTCCA GGTCGAGAAT
TACCGCGCGG ACCCAGAGGT GGTGCGGTGA
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| Protein sequence | MRNQTEGVPA KDAELYFGHA RSWDQDRQRK SLRSERIAWV VAGLGLLAAT AEGFALAGLA
PLKTVMPYII RVNQTTGAVD VQTTLTQKPM RYDEAVTKFF LAQYVRARES WLPAAAEENF
RAVTILSEPG EQQRWGRFFN SNNAASPQVV WGKGAVVQAR VRNIAFINDR VANVRFTRTV
QTDTDTQSSD WIATVTFRYT NAPMAEGDRY RNPLGFQVEN YRADPEVVR
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