| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5002 |
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| Symbol | |
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| ID | 5195966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 119332 |
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| End bp | 120549 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640579437 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001260385 |
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| Protein GI | 148550955 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 0.480101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.925872 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGAGT CTGCGGCCGA GGCCCCTCGT CGCCCGCAAG GCGACCCAAC ACCTGAACGT
GATGAAATCA TCCGCGAACG CGGCATCGAT CCGATCGGTG GGATGACACC CGCAAAGCGG
AATACCGCCC TTATTTTCGC CGGGACGGCG ATGGTGCTCG GCATTTTGTG GGTGAACTCG
GGACCGAGCA AGACCGGCTC GAGTTTGATG GGGAAGCCCG AGGCGATGGC CAAAAGGCCG
GATCTCGCGG CGCGCGAAAC GGTCGCTTAT GATGCTGTCG CAGCGAAACC CAAGCCGCTC
GGCGCCGTGG GCGCCGATCC CAATGCGCCT GTCCTCAACC CTCCGCCGAC CGTTGGCCCT
GACGGACAGA TCGTGCCGGC AATACAACCC GGAGCGCAGC CAGCGGCGGC ACCGCAGAAC
ACGCGCCAGA ACCTGGCCGA TCAGGCCCGT CGTTCAACAT TGATCGCTTA TGGCGGCCGC
GAGGCGCTGC AGGCTCCGGG GGGTTCCAAC GGTGCTGGCT CCGAAACCGG CAATGCGGGC
ATAGCTGGCG ACGGCTCGAC CGATCCAGCC GTCCGCAGTT CGCCCAATGC GCTCGATGCG
CTTCGTCAGA GTTCGGCCGT TGGCGAGGCA CGCGCCTCGA TGCTGCCCAA TCGCAACTAT
CTCGTCACCG CCGGCACGCT GATCCCCTGC ATTCTTCAGA CCGCCATGAA TTCGGCGCAG
CCAGGTTACA CCTCCTGCCT CATTCCGCGC GACGTCTATT CGGAGAACGG CCGCGTCGTG
CTGATGGAGA AGGGCACCAA AGTGCTCGGC GAATATCATG GCGGCATCCA GCAAGGGCAG
AACCGGCTCT TTGTGCTCTG GACCCGGGCC GTCACGCCGC AGGGCGTGCG CATCGACCTG
GCTTCGCCGG GCTCCGACGC GCTTGGGCGG GCCGGCATTG CCGGATCGGT CGACACCTTC
TTCTGGGCAA GGTTTGGCAG CGCGCTGTTG CTCTCGCTGG TCGATGATGC CGCCTATATC
GCCGGACAGT CGGTCTCGGG CGGCAGCAAC AATTTCAACA ACACGACGCG CACGCCGAGC
GAGGGGGCGA GCATCGCGCT CCAGAACAGC ATCAACATCC GTCCGGTCCT GAAAAAGAAC
CAGGGCGAGG AAGTCGGCAT CTTCGTCGCC AAGGACTTTA ACTTCGCCGA CGTCTACAAT
CTCGAGCTGC GGCGCTGA
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| Protein sequence | MDESAAEAPR RPQGDPTPER DEIIRERGID PIGGMTPAKR NTALIFAGTA MVLGILWVNS
GPSKTGSSLM GKPEAMAKRP DLAARETVAY DAVAAKPKPL GAVGADPNAP VLNPPPTVGP
DGQIVPAIQP GAQPAAAPQN TRQNLADQAR RSTLIAYGGR EALQAPGGSN GAGSETGNAG
IAGDGSTDPA VRSSPNALDA LRQSSAVGEA RASMLPNRNY LVTAGTLIPC ILQTAMNSAQ
PGYTSCLIPR DVYSENGRVV LMEKGTKVLG EYHGGIQQGQ NRLFVLWTRA VTPQGVRIDL
ASPGSDALGR AGIAGSVDTF FWARFGSALL LSLVDDAAYI AGQSVSGGSN NFNNTTRTPS
EGASIALQNS INIRPVLKKN QGEEVGIFVA KDFNFADVYN LELRR
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