Gene Swit_4980 details

Gene Information

• Locus tag: Swit_4980
• ID: 5195972
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sphingomonas wittichii RW1
• Kingdom: Bacteria
• Replicon accession: NC_009508
• Strand: -
• Start bp: 89903
• End bp: 93274
• Gene Length: 3372 bp
• Protein Length: 1123 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640579416
• Product: hypothetical protein
• Protein accession: YP_001260364
• Protein GI: 148550934
• COG category: [S] Function unknown
• COG ID: [COG3152] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 43
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGCTGA TGTTCATGGC CTTGCGGCGT TATCGCGATT TTAGTGGGCG CGCCAGCTTG 
GGAGAATTCT GGTCATTCGC TGGTCTCTCC GCCATAGTCT TTCTGGTTCT CATCACTCTC 
CTGATCGCCG GCTCCGAGCC AAAAGCGGGA AATAGCGCTC CCTCGGTGCC GCCGGGCTGG 
GTCTTTGCCT ATATTACCTG GTGGTTAGTC ACCGCGATTC CCTGGTTTGC TGTTCAGGTT 
CGTCGATTGC ACGATCAGGG TCGCAGTGGA CGTTGGGTTC TCATCAATGT CGCGGCCTAC 
GCGATGATGG GGTTTGGCAA CAGCTTCGCA ATTCTTCTCT ACGCATTTTC CATGCTTCTC 
ATGCTACTGC CGGGCGAGAA GCGCGCGAAC CGCTTCGGGC CGGTGCCGTC GAGCGACAAC 
AAGAAGCATG AAACGACGCG GCTGGTGTCC GTGAACCATG CGTCCGTGGC TGAGGGAGCG 
ACATTTTCCG GGACGAACGA TGTGCAGCAC GTTGCGATCT CGCCAACGGG CGCAAACGAC 
GGTCACGATC TTTCTCATGA GAAGGAGGCG GATATGGCCG ACCTGGCTGG CGATTTGCAG 
AACCTCATCG AGAACAGGCC TGATGGCCGT TTTGCCTGCT TTGGCTATTC TTTCTCCACA 
CTCGATCAGG CAGTCCGGTT TGCCGAGCGG AAGGTGAGAG CATCCGATGA TAGCCTCAGA 
AATGCCCGCA CTGAACCGTT ACGTGTCATC TCTCCTCCGA TACCCGATCT TGAGCGCTTC 
GATTTGCAGA AAGCGCCTCT TTCGCCGCTT CCCGCAAGCC TGCGACTATC GGAGAATTCG 
TCTACATCTG CTTCTCCGGA TGCAAACGGG ATAGTCGTAA ATGCCAATGG GCGCTTCGTC 
TTCGCCGGTT ACGCCTTCTC GACCTATGAT CAGGCTTTGA AATATAAGGA CAGGATGACC 
GGAAAAGCGA GTGACCGGAC ACATTCGATG CAGCCGGAAA GCTCGGCTCA AAACAGCGAC 
GGCACCGCCA AAATTGCGGC TGTTGTTCCT CGACTATCCG CCGCGCCGGG GCCATCCGAT 
GGGGAAGAAC CGGTCAGGCT GGTGCCTCTT GAAGACGAGA ATGGTATCAT CGCTCAAGCT 
GATGGCCGCT TCAAATATGG CGGTTATTCT TTCACGACCT ATGATCAGGC CCTGCGCTAT 
CGGGCCCGGC TGACCGGGAC GTTGGAACAT AGGGAGAGGC CGGCCGCGAT CATTTCTTCG 
TTGGCTGGCC GATTTGTTCC GCGAACCAGC GGTGACCAAA GTCGGGCCTC CGGGCTTTCG 
AGTGATGCAC GCTGCGAAAG GCAGGCGACC CCATGTGCAC AATGGATCGC CGATGCAACG 
GATATCAGGG TTGGCGATGT CTCCCTTCGC GCAGAAATGC TATATTTTGG CGCAGCCACG 
CGTTCAGAAG GGCATCGCAC CCTCGTTAAT CCGGCGATGG CCATTGGGCG TCAAGCGGAC 
AGTCTTGGGA CTTCGCTTTC CTATTGGCCA AGTTATGACG ACATCTCTCC CGAGGCACGG 
CGCGCCTATC TCGATTGGCT GGCAAGCGGC AGGCGCAGTC CGGCAACGCC GATCGGCTAT 
GTATTCCTCT ATTTCTATGG TCTTGAACGA CGCCTTATTC ATGAGCGTTC CCAGGAGGAT 
GCGCCAGCAA TCTTGGCGGA AGTCGAAGCG CTGCTGGCCA TTTATGGTTC AAACGGGAGC 
TTCCAGAGCT ATGCCCGTGC ACTGATCGAC ACAGCCGAAA TCCTGTTCGA TCGCCCGGTG 
CCGCCACTCA AGGCCAGCCT GTCGACGCGC TATAGCTGGG AAATTCCGAT TGGGCTGCGG 
GTCCATCTCG GCAGAAAAGT GCGGGATGGC ACGCCTATCG ATGCAGAGGA TGCGCTTTGC 
TGGGCGCTTG CCCATCCCAA TCTCTCAACC CGCACGGCCG TCACGCGCTG CTTCGAGCCG 
TTTCGGACGT TGTGGCACGC ACGTTACGCA CAAGCATATC CCAAAGGCAT CAAAGTGCGG 
TCGTCAAAGT CGCGGCTTCA TCACAGCTAT CGCTCCGCCA GTGCAGAGTT CAACGCGAAC 
GTCCAACTCG ATGATCTTCC CGACGTTGGA GCGATTAACG GTCCCATTTC CAAATTGCAG 
AGCCTCTTGG ATGGTTGCAC GCAGGCGCTT GACCCGCTGA GCAGGCTGCT CGGAAGATCG 
CCGGAGGAAG AAGGGAGCGT GCTCGCCTCG GCCTTGCATC CGGCAGACGC GCGAGGAGAA 
GCGGAACAAG CCGCGTTTGA GGGAGCGCGA ATCCAGCTGC TTTCAAGCAC GAGTGATGGA 
AGTTTCGCGT CGATCAAATA CGATGATCTG CTCTCAATCT TACTAGCCAA CGGACAGATG 
TCGGCGGACC GACGGAGCCT TTATGCGCGT CGTCTGCCCG ACATACTTGA CGCTATGGAC 
GTTGGGTATG AGCCTGACCG ACGATTTGGA CCGGCTGTGA CGTTTGCGCC TGATACAACT 
TTATGCGTGT TCGCCCGCAG GGGCACCACT CAACCCGTTG AGGGACGTCA GGCTTATAGG 
TCCGCCCGGA TCATGGTCGA GATTGCGGTC CTTGCAGCCA TGGCGGATTC TGTCGTGGTC 
GACGCCGAGC AGCAATCTAT CGTCACTGAC CTTGCCGCGA TCGCTGGACT GGATGATCAG 
GACCGCCAGC GCCTTGCTGC CCACAGTATC GCTTTGATTG CCAATCCGCC AAAGCTGCGT 
GCAGCGACGA AGCGTCTCCT GGAACTGCCG GAAGAAGAGA AAGATTTCGT GCTTTCGTCA 
GCGGTTCACG CCATCCTTGC CGATCAGAGG GTAACGCCGG CGGAGGTTCG ATTCCTGGAG 
AGCCTCTACA AGGCGCTTGG ACGTCCGCAG GATGACGTTT ACACGCGGCT GCATGCTGGC 
AGCACTCAGG GTCAGCCAAG GCACAAATCT TCAGGTCAAA GCGTGGGCAG CAGCGTCGAT 
GTCGAGCGGC TTGCCCGATT GCAGGAGGAA ACCGCATCGG TTTCGGCCAT GCTTGCCGGG 
ATATTCCGTG AGGATGAACC CGAAGTCGCT ACTCCATCTT CGCCCCCTGC CGTTGTTGGT 
GAGGTTCCAC TGTTCGACGG TCTGGACATC GCCCATGGCC GGGTGCTTCA CGGGCTGGCG 
CAAGAGCCAC TTGAGGCAGA AGCCTTTGAA ACGCTTTGTC GCGATAATCG CCTGCTGCCA 
GGGGGAGCGA TCGAGACGAT CAACGATTGG GCCTTCGACA TCTTCGATGA CCTTGCTATC 
GAGGATGACG ACCTTGTCTC GATCCAGCCG CATCTCGTTC AAACCATTCA GTCAATGAGC 
CAAGCCGCAT GA 

 

Protein sequence

MPLMFMALRR YRDFSGRASL GEFWSFAGLS AIVFLVLITL LIAGSEPKAG NSAPSVPPGW 
VFAYITWWLV TAIPWFAVQV RRLHDQGRSG RWVLINVAAY AMMGFGNSFA ILLYAFSMLL 
MLLPGEKRAN RFGPVPSSDN KKHETTRLVS VNHASVAEGA TFSGTNDVQH VAISPTGAND 
GHDLSHEKEA DMADLAGDLQ NLIENRPDGR FACFGYSFST LDQAVRFAER KVRASDDSLR 
NARTEPLRVI SPPIPDLERF DLQKAPLSPL PASLRLSENS STSASPDANG IVVNANGRFV 
FAGYAFSTYD QALKYKDRMT GKASDRTHSM QPESSAQNSD GTAKIAAVVP RLSAAPGPSD 
GEEPVRLVPL EDENGIIAQA DGRFKYGGYS FTTYDQALRY RARLTGTLEH RERPAAIISS 
LAGRFVPRTS GDQSRASGLS SDARCERQAT PCAQWIADAT DIRVGDVSLR AEMLYFGAAT 
RSEGHRTLVN PAMAIGRQAD SLGTSLSYWP SYDDISPEAR RAYLDWLASG RRSPATPIGY 
VFLYFYGLER RLIHERSQED APAILAEVEA LLAIYGSNGS FQSYARALID TAEILFDRPV 
PPLKASLSTR YSWEIPIGLR VHLGRKVRDG TPIDAEDALC WALAHPNLST RTAVTRCFEP 
FRTLWHARYA QAYPKGIKVR SSKSRLHHSY RSASAEFNAN VQLDDLPDVG AINGPISKLQ 
SLLDGCTQAL DPLSRLLGRS PEEEGSVLAS ALHPADARGE AEQAAFEGAR IQLLSSTSDG 
SFASIKYDDL LSILLANGQM SADRRSLYAR RLPDILDAMD VGYEPDRRFG PAVTFAPDTT 
LCVFARRGTT QPVEGRQAYR SARIMVEIAV LAAMADSVVV DAEQQSIVTD LAAIAGLDDQ 
DRQRLAAHSI ALIANPPKLR AATKRLLELP EEEKDFVLSS AVHAILADQR VTPAEVRFLE 
SLYKALGRPQ DDVYTRLHAG STQGQPRHKS SGQSVGSSVD VERLARLQEE TASVSAMLAG 
IFREDEPEVA TPSSPPAVVG EVPLFDGLDI AHGRVLHGLA QEPLEAEAFE TLCRDNRLLP 
GGAIETINDW AFDIFDDLAI EDDDLVSIQP HLVQTIQSMS QAA