Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4898 |
Symbol | |
ID | 5195911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | + |
Start bp | 12709 |
End bp | 13521 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640579339 |
Product | IS4 family transposase |
Protein accession | YP_001260287 |
Protein GI | 148550857 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3293] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 0.0763576 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.401338 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGACCC CGGCCACCCG CGCGCAGCAT ACGCGCGTGG CGAAGCGATA CCAGACGGAT TTGAGTGATG CGGAGTGGCG ATTGATCGCC GCATTTCTGC CCGAGGCACG TTCGACCGGG CGACGGCGGG AATGGCCGAT GCGCGAGATC GTGAACGCCA TATTCTATGT GCTGCGCGGC GGGATCGCCT GGCGACTGTT GCCGAAAGAC TTTCCTCCGT GGCAGACAGT CTACCGCTGG TTTGCCCTGT TGCGCGACGA AGCAGTGTTC GAGCGAATGA ACCATGCTCT GGTGATGACC GACCGCGAAC GGACGGGGCG CGAGGCCAGC CCGAGCGCGG CCATTATCGA CAGTCAGAGC GTCAAGACCA CGGAAAGCGG CGGCCCACGG GGCTATGACG CCGGCAAGAA GATCAAGGGG CGCAAGCGAC ATGCCCTGGT CGATACCGAT GGCAGGGCGC TGCTGGTCGA ACCTCACACC GCCGATGTCC AGGATCGTGA TGGCGGTGGT GCAGTGCTGC AAATATCACG CGGCCTGTTC CCGTTCATCG AGAAGGTCTG GGCCGATGGC GGCTACAACC ATGAGCGCGT CACGCAGGCT ACCAGCATCA CCGTTGAAAT CGTCAGCAAA ATCACCGGGC AGACCGGCTT CGTCGTCCTG CCAAGGCGCT GGGTCGTTGA ACGCTTCTTC GCATGGATCA ACCGAAATCG CCGTCTCGCC AAGGACGTCG AGGCAACCCT CAAGTCCGCC GCAGCATTCC TCTACGCCGC CGCTGCCATG CTCATGATCC GCAGACTGGC GCGATCAGCG TGA
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Protein sequence | MWTPATRAQH TRVAKRYQTD LSDAEWRLIA AFLPEARSTG RRREWPMREI VNAIFYVLRG GIAWRLLPKD FPPWQTVYRW FALLRDEAVF ERMNHALVMT DRERTGREAS PSAAIIDSQS VKTTESGGPR GYDAGKKIKG RKRHALVDTD GRALLVEPHT ADVQDRDGGG AVLQISRGLF PFIEKVWADG GYNHERVTQA TSITVEIVSK ITGQTGFVVL PRRWVVERFF AWINRNRRLA KDVEATLKSA AAFLYAAAAM LMIRRLARSA
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