| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4894 |
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| Symbol | |
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| ID | 5195956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 6965 |
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| End bp | 9391 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640579335 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001260283 |
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| Protein GI | 148550853 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 0.0512869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.075257 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCTC GTATGTTTAT CGGCGCAAGC CTTGTGGCTT TGACTGTTTC GTCACCGGTG
TTTGCACAGG CAGGTGCGAA AACCGAAGTC AGTGAGCCGA GCCAAAATGA AGGCATTCAG
GATATCGTCG TCACTGCACA GCGCCGCGAG GAAAGTACCC AGAAGGCAGC GCTGTCCATT
GTCGCGTTTG GCGGCGATCA GTTGCGTTCA GCCGGTGTCA CGGATGCAGG CAGCTTGGCG
AAGCTTGCCC CGGGTCTCCA GATTTCTGGA GGCACGAGCA GTATGATTTA TATTCGTGGC
GTTGGCGATT ACGGTGTCAC GGCAACTTCG AATTCAGCTA TAGCGACCAG CCTCGATGGC
GTTGTCATTT CTCGCCCCCA AGACATTTCT GGCAACTTCT TTGATCTGCA GCGTGTCGAA
GTGTTGAAGG GACCGCAAGG AACGCTCTAC GGCAGAAATG CGAGCGGCGG TGCCGTCAAT
CTGATTACTG TGGCCCCCGT CCTTGGTGAA TTTTCGGGCT ATGCTGAAGT AAACCTGGGC
GATTATGACC AGTATGGCAT TGAAGGCGCC TTTAACGTTC CTGCGAGCGA TGATGGCGCA
TTTCGACTGT CCTACAGTTT AAACCGCAGA AACGGCTATC TCTCGAACGG TGGGGACGAC
GATGATCGTG AGGCGGTGCG GTTCCAGGCC AGGTTCAAAT CCGGTCGGCT GTCGCTGCGC
GCGCAGCTCA ATTATCTCCA TCGCGGTGGG GTCGGTACGG GTTTTTCGGT TCTGGGCCGG
TTGCCTGGAA TGTCGCCGTG GACAGGCAAC ACCGATCCTG CTGCCGGCGC GGCGTATATT
GCCGCAGCCA CCGCTCAGTT CAATGGCGCA CTGGCCGCGG GATGCAACCC GGCACCTAAT
GGTAACTGCC CGCCTCCGCC CTCCTTGATT GCGAATCCTT CCGACAGTCG GCTATTCCAG
GATATCGAGA CGTTTGGTGG GCATATGCAG CTCGATTACG ATTTGGATTG GGCGACGCTG
ACTGTCATAC CCGGCTATCG TCGCTCTACC TTGGCATTCT CGTCGCAGCC ATCCTTTATG
TATAACGTCG GCGGCGTTTA TGACTCTGCT GGAAATAGGT CCAAAGGCGA ATTATCTGAC
CAATATACTT TGGAAGCGCG CTTGGGTGGA GAGAGTGGCG TCCTGAAATG GGTCGCCGGC
GGTTACTATT TAAAGGAAAA GCAGACGAAC GACTTCACCA TTCAAGCTGG GCCGATCCTG
AACCAGCGGA CGACAGGTGC GTTGACCACG CAAGCGTTTG CTGCCTTCGG TCAGTTGACC
TTCAACGTTT CAGATCGATT CCGAGTGACG GGCGGAATTC GCTATACTAG CGACAAGCGT
GTGTCGGATA GATTGGCCCA AGCTGCGATC TCTCCATCGG TCATTATTCC AGACCCAGTT
ATCTCCGGTC TACCGCCGAT CCCTTGCCTT CCGGACGTAC CAGTTCCGGG GGCCAACCCT
CCTGGAACGA ACTGTCGATT GCTGGCTGCT GACCCAACCA TCTACAGAAG TGCAATCACT
TTCAATAAGG TAACGTGGAA GGCCGGGATC GAATTCGATG TTGCGACTGC GAGCATGTTC
TATGCCGATG TCAGCACTGG TTTCAAGGCG GGAGGATTTA GTCAAGCGCT TAGCTTGACT
GACCCGACCA AGTTGCAATC CTATGCCCCG GAAACAATCA CTGCTTATAC CGTGGGACTG
AAGAATCGGT TCCTAAACAA TAGGCTGCAA ATCAACCTTG AGGCCTTCTA TTGGGATTAT
AAGAATCTGC AGCTTTCTGC ACAGGGCCTT GATGGAGCCG GCCTCGTTAC GATTCTGACG
CAGAATGCGG GCAAGTCGAC GATCAAGGGC GCGAGCGTAA GTCTTGAAGC AAGGCCGTGG
CACGGCATGA CGCTTCACGG AGCGGTGGAT TATGTTGATT CGAAGTATGA TAGCTTCGTG
ATTACCCAGC CGACGCAGTT TGTGCCACCG GGCCGGACTG GCTGCATCCA GACCTATTCT
GGCGGATTTG CGACTGTGGA TTGCTCCGGC TTCCCACTTG TGCGCTCACC GAAATGGTCA
GGATCGGCCG GGTTCACGCA GTCATTTGAC ATGGCGAATG GCGGAACTGT TGCCCTTGGT
GGTGACCTGT CGTTTGCCAG CAGTGCCTAC CTTTTCACCG AGTTCCTTCC CATTCAAAAG
CAGGGCTCCT ACGCAAATCT CTCCGCTTCG TTGACCTATA CGGCCGCTGG TGATCGCTGG
TTCATTAGTG GATATGTCCG CAACATTACT GATGAAGTGA TCTATACAGG CGGCAGTGGG
CAGAGTTCCG CCTTCGTCCA GGGATGGGTA TCGAGTAGTA TAGCACCTCC ACGCACTTGG
GGTGTACGCG CTGGTCTCAA GTTCTAA
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| Protein sequence | MKARMFIGAS LVALTVSSPV FAQAGAKTEV SEPSQNEGIQ DIVVTAQRRE ESTQKAALSI
VAFGGDQLRS AGVTDAGSLA KLAPGLQISG GTSSMIYIRG VGDYGVTATS NSAIATSLDG
VVISRPQDIS GNFFDLQRVE VLKGPQGTLY GRNASGGAVN LITVAPVLGE FSGYAEVNLG
DYDQYGIEGA FNVPASDDGA FRLSYSLNRR NGYLSNGGDD DDREAVRFQA RFKSGRLSLR
AQLNYLHRGG VGTGFSVLGR LPGMSPWTGN TDPAAGAAYI AAATAQFNGA LAAGCNPAPN
GNCPPPPSLI ANPSDSRLFQ DIETFGGHMQ LDYDLDWATL TVIPGYRRST LAFSSQPSFM
YNVGGVYDSA GNRSKGELSD QYTLEARLGG ESGVLKWVAG GYYLKEKQTN DFTIQAGPIL
NQRTTGALTT QAFAAFGQLT FNVSDRFRVT GGIRYTSDKR VSDRLAQAAI SPSVIIPDPV
ISGLPPIPCL PDVPVPGANP PGTNCRLLAA DPTIYRSAIT FNKVTWKAGI EFDVATASMF
YADVSTGFKA GGFSQALSLT DPTKLQSYAP ETITAYTVGL KNRFLNNRLQ INLEAFYWDY
KNLQLSAQGL DGAGLVTILT QNAGKSTIKG ASVSLEARPW HGMTLHGAVD YVDSKYDSFV
ITQPTQFVPP GRTGCIQTYS GGFATVDCSG FPLVRSPKWS GSAGFTQSFD MANGGTVALG
GDLSFASSAY LFTEFLPIQK QGSYANLSAS LTYTAAGDRW FISGYVRNIT DEVIYTGGSG
QSSAFVQGWV SSSIAPPRTW GVRAGLKF
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