Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4894 |
Symbol | |
ID | 5195956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | - |
Start bp | 6965 |
End bp | 9391 |
Gene Length | 2427 bp |
Protein Length | 808 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640579335 |
Product | TonB-dependent receptor |
Protein accession | YP_001260283 |
Protein GI | 148550853 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 0.0512869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.075257 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCTC GTATGTTTAT CGGCGCAAGC CTTGTGGCTT TGACTGTTTC GTCACCGGTG TTTGCACAGG CAGGTGCGAA AACCGAAGTC AGTGAGCCGA GCCAAAATGA AGGCATTCAG GATATCGTCG TCACTGCACA GCGCCGCGAG GAAAGTACCC AGAAGGCAGC GCTGTCCATT GTCGCGTTTG GCGGCGATCA GTTGCGTTCA GCCGGTGTCA CGGATGCAGG CAGCTTGGCG AAGCTTGCCC CGGGTCTCCA GATTTCTGGA GGCACGAGCA GTATGATTTA TATTCGTGGC GTTGGCGATT ACGGTGTCAC GGCAACTTCG AATTCAGCTA TAGCGACCAG CCTCGATGGC GTTGTCATTT CTCGCCCCCA AGACATTTCT GGCAACTTCT TTGATCTGCA GCGTGTCGAA GTGTTGAAGG GACCGCAAGG AACGCTCTAC GGCAGAAATG CGAGCGGCGG TGCCGTCAAT CTGATTACTG TGGCCCCCGT CCTTGGTGAA TTTTCGGGCT ATGCTGAAGT AAACCTGGGC GATTATGACC AGTATGGCAT TGAAGGCGCC TTTAACGTTC CTGCGAGCGA TGATGGCGCA TTTCGACTGT CCTACAGTTT AAACCGCAGA AACGGCTATC TCTCGAACGG TGGGGACGAC GATGATCGTG AGGCGGTGCG GTTCCAGGCC AGGTTCAAAT CCGGTCGGCT GTCGCTGCGC GCGCAGCTCA ATTATCTCCA TCGCGGTGGG GTCGGTACGG GTTTTTCGGT TCTGGGCCGG TTGCCTGGAA TGTCGCCGTG GACAGGCAAC ACCGATCCTG CTGCCGGCGC GGCGTATATT GCCGCAGCCA CCGCTCAGTT CAATGGCGCA CTGGCCGCGG GATGCAACCC GGCACCTAAT GGTAACTGCC CGCCTCCGCC CTCCTTGATT GCGAATCCTT CCGACAGTCG GCTATTCCAG GATATCGAGA CGTTTGGTGG GCATATGCAG CTCGATTACG ATTTGGATTG GGCGACGCTG ACTGTCATAC CCGGCTATCG TCGCTCTACC TTGGCATTCT CGTCGCAGCC ATCCTTTATG TATAACGTCG GCGGCGTTTA TGACTCTGCT GGAAATAGGT CCAAAGGCGA ATTATCTGAC CAATATACTT TGGAAGCGCG CTTGGGTGGA GAGAGTGGCG TCCTGAAATG GGTCGCCGGC GGTTACTATT TAAAGGAAAA GCAGACGAAC GACTTCACCA TTCAAGCTGG GCCGATCCTG AACCAGCGGA CGACAGGTGC GTTGACCACG CAAGCGTTTG CTGCCTTCGG TCAGTTGACC TTCAACGTTT CAGATCGATT CCGAGTGACG GGCGGAATTC GCTATACTAG CGACAAGCGT GTGTCGGATA GATTGGCCCA AGCTGCGATC TCTCCATCGG TCATTATTCC AGACCCAGTT ATCTCCGGTC TACCGCCGAT CCCTTGCCTT CCGGACGTAC CAGTTCCGGG GGCCAACCCT CCTGGAACGA ACTGTCGATT GCTGGCTGCT GACCCAACCA TCTACAGAAG TGCAATCACT TTCAATAAGG TAACGTGGAA GGCCGGGATC GAATTCGATG TTGCGACTGC GAGCATGTTC TATGCCGATG TCAGCACTGG TTTCAAGGCG GGAGGATTTA GTCAAGCGCT TAGCTTGACT GACCCGACCA AGTTGCAATC CTATGCCCCG GAAACAATCA CTGCTTATAC CGTGGGACTG AAGAATCGGT TCCTAAACAA TAGGCTGCAA ATCAACCTTG AGGCCTTCTA TTGGGATTAT AAGAATCTGC AGCTTTCTGC ACAGGGCCTT GATGGAGCCG GCCTCGTTAC GATTCTGACG CAGAATGCGG GCAAGTCGAC GATCAAGGGC GCGAGCGTAA GTCTTGAAGC AAGGCCGTGG CACGGCATGA CGCTTCACGG AGCGGTGGAT TATGTTGATT CGAAGTATGA TAGCTTCGTG ATTACCCAGC CGACGCAGTT TGTGCCACCG GGCCGGACTG GCTGCATCCA GACCTATTCT GGCGGATTTG CGACTGTGGA TTGCTCCGGC TTCCCACTTG TGCGCTCACC GAAATGGTCA GGATCGGCCG GGTTCACGCA GTCATTTGAC ATGGCGAATG GCGGAACTGT TGCCCTTGGT GGTGACCTGT CGTTTGCCAG CAGTGCCTAC CTTTTCACCG AGTTCCTTCC CATTCAAAAG CAGGGCTCCT ACGCAAATCT CTCCGCTTCG TTGACCTATA CGGCCGCTGG TGATCGCTGG TTCATTAGTG GATATGTCCG CAACATTACT GATGAAGTGA TCTATACAGG CGGCAGTGGG CAGAGTTCCG CCTTCGTCCA GGGATGGGTA TCGAGTAGTA TAGCACCTCC ACGCACTTGG GGTGTACGCG CTGGTCTCAA GTTCTAA
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Protein sequence | MKARMFIGAS LVALTVSSPV FAQAGAKTEV SEPSQNEGIQ DIVVTAQRRE ESTQKAALSI VAFGGDQLRS AGVTDAGSLA KLAPGLQISG GTSSMIYIRG VGDYGVTATS NSAIATSLDG VVISRPQDIS GNFFDLQRVE VLKGPQGTLY GRNASGGAVN LITVAPVLGE FSGYAEVNLG DYDQYGIEGA FNVPASDDGA FRLSYSLNRR NGYLSNGGDD DDREAVRFQA RFKSGRLSLR AQLNYLHRGG VGTGFSVLGR LPGMSPWTGN TDPAAGAAYI AAATAQFNGA LAAGCNPAPN GNCPPPPSLI ANPSDSRLFQ DIETFGGHMQ LDYDLDWATL TVIPGYRRST LAFSSQPSFM YNVGGVYDSA GNRSKGELSD QYTLEARLGG ESGVLKWVAG GYYLKEKQTN DFTIQAGPIL NQRTTGALTT QAFAAFGQLT FNVSDRFRVT GGIRYTSDKR VSDRLAQAAI SPSVIIPDPV ISGLPPIPCL PDVPVPGANP PGTNCRLLAA DPTIYRSAIT FNKVTWKAGI EFDVATASMF YADVSTGFKA GGFSQALSLT DPTKLQSYAP ETITAYTVGL KNRFLNNRLQ INLEAFYWDY KNLQLSAQGL DGAGLVTILT QNAGKSTIKG ASVSLEARPW HGMTLHGAVD YVDSKYDSFV ITQPTQFVPP GRTGCIQTYS GGFATVDCSG FPLVRSPKWS GSAGFTQSFD MANGGTVALG GDLSFASSAY LFTEFLPIQK QGSYANLSAS LTYTAAGDRW FISGYVRNIT DEVIYTGGSG QSSAFVQGWV SSSIAPPRTW GVRAGLKF
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