| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5398 |
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| Symbol | |
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| ID | 5195675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | - |
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| Start bp | 305440 |
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| End bp | 308529 |
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| Gene Length | 3090 bp |
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| Protein Length | 1029 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640579325 |
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| Product | transposase Tn3 family protein |
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| Protein accession | YP_001260273 |
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| Protein GI | 148550834 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0815937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTGCG AAGAAATTCG CCTTGTTTAT CGGCATGGGC CGTCCCCTTC GCAAAAGTTG
AAAGTTTCGC ACGGTATGCC CACCCGTCAC CTCACTGACG CCCAGCGTCA GGGCTTTGCC
CGCTTTGATG GCGAACCGTC GGCCGATCAA CTCGCGCGAT ATTTCCATCT GGACCAAACT
GATCGCGACC TCATTGGAAC TCTGCGCGGC GACCACAATC GGCTCGGCTT TGCCGTGATG
CTGACGAGCG CCCGGTTTCT GGGCGCATTT CCAGTCTCGC CCGCCGAGAT CCCAGCGTCG
GTCCTGGCGG CCGTGATCGA ACAACTCGCT CTTGAACCCG GCACGGACGT GGACGCCTAT
TTTGCGGGAA GCCGACGCAT CCGGCACCTC GCGCTCATCC GGACGCACTG CGGCTTCACG
GACTTTGGCG ACAACGCGGT GGCACGTTTC CGGCTGACCC GATGGCTCTA CGCCCTTTGC
TGGAGCGGCG ACGATCGGCC CGGCCCCCTG ATTGATCGAG CTGCGGCCTG GCTGATCGCC
AACAAGGTGC TGCTGCCGGG CGTCACGGTC GTCGAGCGCC TGGTTGGCAG GATCCGCGAT
CGTGCGCGGA CCAGGCTTTG GCGCCATCTG GTCGCCAGCT TGAGCGATGA CCAGCGCGTG
CGCATCGCCG CGCTGTTTGA CGATGGCGAC ACATCCACGT TCGCCGCCCT GGACGCGCTC
CGGACCGTTC CCTCCAAGCG CATGCCGACC GAACTCTTCC GACACCTTGA TCGGCTCGAT
GCGGTCCGGG CGTTCAATCT GCGGCCGGCG CCACCGCGGG GCGTTCCCGC CACAACCCTT
GAGCGGCTCG CGCGGGTAGC GCGCGTCGGC AAGCCCTCGG CCATCGCCGC CCTTCAGGAG
CCTCGTCGAA CCGCGACCGT AGCCGCGCTC TTCCATACGC TCGAAGCGGC GGCCCAGGAC
GACGCCGCCG AGCTGGCCGA GGCTCTGCTC GCCGACTTGG TGAAAGGGGC TGAAGCCGCC
GACAAACAGG CCCGCCTGCG CAGTCTGCGC GATCTCGATG GCGCCGCGAT GCTGCTCCAC
GCAATGGGTC TGTTGGTTTT GACCGACGAC GCCCTGCCCC TCAATGAATG GCGAGATGTG
CTCTTCGAGC GGTTGCCCCG TCCCGACATC GAGGCCGCCA TGTCCAAGGT GGAGGCGATC
GCCAAGCCCG CGGAGACCAA GCCCTATGAT CAACTGCGAA CAAAATGGCG GAGCGCCCGG
CGATTGTTCT TTGAAATCGC TACCCGCATC GAGACCGACG CTGCCCCAGG TGGCAAAAAC
GTCAAGGCCG CGATCAGCTA CCTCAAGGGC GTGGACGACT GGTCCTCTCT CGTCAAGATG
CGCGGCGCAC CGATCGCTGC GGTCTCGAAG GCGTGGAGGC AACATGTCCT GGATGACGAT
GGCAGGATGC GCGACCCGAA GGCCTATGTC TTCGCGATCA TCGATGCGTG GCGTCTGGCG
ATCAAGCGTC GCGATGTGTT CGCCAAGCCC GGCATCCGAT ACGGGGATCC CCGGCGCGGG
ATGCTCGAGG GCGAGTCCTG GCACAATTCC AGGTTGATGG TAGCACGCGC CCTGGGCCGA
TCTCTGGAAG CCGACATTGA GATTGACGGT CTCTCCCGCC TTCTCGACGA GGCATATCGA
CATGTCGTTG CGCGCGCCGG CGACAATCCG GACCTGCGTT TTGAGACGGT CGCCGACAAG
ATGGGGATTG TGGTCACGCC CCTCGACAAG CTTGATGAAC CCGAGAGCCT TCGAGCACTT
CGCGCCGCCG TCCAAACGCG CATGCCGAAG GCCGGAATGC CCGACATCTT TCTTGAAGTC
ATGGCGCGAA CCGGATTTGC CAAGTCCTTT ACGCATCTGA GCGAGCGTCA GGCCACCGTC
GAGCACTTCG AGATAAGCCT GTGCGCGACC CTGGTCGGCG GCGCCTGCAA CATCGGTCTT
GAGCCGATCG TGCGCCCGGA ATTTGCGGCT CTGCGTCGCG ACCGTCTTTC TTGGGTCGGT
CAGAATTTCA TTCGGCCCGA GACCATCGCC GCGGCCAACG CCGCGATCGT TTCCGCTCAC
AGTCGTCTGG ATATCGTCCA ACATTGGGGC GCAGGCGAGG TGGCCAGCGC CGACGGCATG
CGTTTTGTCG CTCCGTCGAG CGCCATACAC GCCGGGCCCA ACCCCAAATA TTACGGCCAG
GAGCGCGGCG TCACTTGGTA CAACATGATT TCCAATCAGT TCAGCGGTCT GACCGGAGCG
GTCATCCCCG GCACGTTGCG CGACAGCCTG GTCGTCCTGG CTCTCCTGCT GGAGCAGGAA
ACCGAGCTCG ATCCTCTGGA GATCATGACC GACACCGCCG CCTATTCCGA CGCCATTTTC
GGTCTGTTCT GGCTCTTGGG CTACCGGTTC AGCCCCCGTC TGGCGGACAT CGGCGACGCC
AAACTCTGGC GTATCGACCG CCAGGCGAGC TATGGGCCGT TCGATCAGAC CGCCTGGGGC
AGGGTTAAAA TCAATCTGAT CCGGGAAAAC TGGTCCGACC TTATCCGCTT GGCCGGATCG
CTCAAGCTCG GCCACCTCAA GGCCGCAGGC GTCATGCGAA TGCTGCAGGT CAAAGACCGC
CCAACAACGC TGGCCAAGGC CCTGTCTGAA CTCGGCCGCA TCATCAAGAC GCTGCATATC
CTGCGATACA TCGATGACCG GCCGTTCCGG CGACGAATAT TGTTTCAGCT CAACCGGCAG
GAATTGCGCC ACAAGCTCGG TCGGCGCGTC CATCACGGCG ATCGGGGCGA AATCAGAAGC
CCTCTGCGTC AGGGCCAAGA GGAGCAGCTT GGGGTCCTCG GTCTGGCCCT CAACTCCATC
GTCCACTGGA ACGCTGTCTA CATGCAGGAA ACCGTGCGCC AACTCAGCGA GGCCGGGACG
CCGCCGCTGC CCGCCGATAT CGCTCGGCTC TCGCCGATAT CTTGGCGTCA CATCAATTTC
CTCGGCCGCT ACGACTTCTC CGTGCCTGAC GCCGTCGCAA ACGGCGGCCT CAGACCGCTA
CGCCAACCTA ATTCCGAATG GGACTTTTGA
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| Protein sequence | MFCEEIRLVY RHGPSPSQKL KVSHGMPTRH LTDAQRQGFA RFDGEPSADQ LARYFHLDQT
DRDLIGTLRG DHNRLGFAVM LTSARFLGAF PVSPAEIPAS VLAAVIEQLA LEPGTDVDAY
FAGSRRIRHL ALIRTHCGFT DFGDNAVARF RLTRWLYALC WSGDDRPGPL IDRAAAWLIA
NKVLLPGVTV VERLVGRIRD RARTRLWRHL VASLSDDQRV RIAALFDDGD TSTFAALDAL
RTVPSKRMPT ELFRHLDRLD AVRAFNLRPA PPRGVPATTL ERLARVARVG KPSAIAALQE
PRRTATVAAL FHTLEAAAQD DAAELAEALL ADLVKGAEAA DKQARLRSLR DLDGAAMLLH
AMGLLVLTDD ALPLNEWRDV LFERLPRPDI EAAMSKVEAI AKPAETKPYD QLRTKWRSAR
RLFFEIATRI ETDAAPGGKN VKAAISYLKG VDDWSSLVKM RGAPIAAVSK AWRQHVLDDD
GRMRDPKAYV FAIIDAWRLA IKRRDVFAKP GIRYGDPRRG MLEGESWHNS RLMVARALGR
SLEADIEIDG LSRLLDEAYR HVVARAGDNP DLRFETVADK MGIVVTPLDK LDEPESLRAL
RAAVQTRMPK AGMPDIFLEV MARTGFAKSF THLSERQATV EHFEISLCAT LVGGACNIGL
EPIVRPEFAA LRRDRLSWVG QNFIRPETIA AANAAIVSAH SRLDIVQHWG AGEVASADGM
RFVAPSSAIH AGPNPKYYGQ ERGVTWYNMI SNQFSGLTGA VIPGTLRDSL VVLALLLEQE
TELDPLEIMT DTAAYSDAIF GLFWLLGYRF SPRLADIGDA KLWRIDRQAS YGPFDQTAWG
RVKINLIREN WSDLIRLAGS LKLGHLKAAG VMRMLQVKDR PTTLAKALSE LGRIIKTLHI
LRYIDDRPFR RRILFQLNRQ ELRHKLGRRV HHGDRGEIRS PLRQGQEEQL GVLGLALNSI
VHWNAVYMQE TVRQLSEAGT PPLPADIARL SPISWRHINF LGRYDFSVPD AVANGGLRPL
RQPNSEWDF
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