| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5366 |
|---|
| Symbol | |
|---|
| ID | 5195730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | + |
|---|
| Start bp | 272857 |
|---|
| End bp | 273423 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640579293 |
|---|
| Product | TraE family protein |
|---|
| Protein accession | YP_001260241 |
|---|
| Protein GI | 148550802 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02761] type IV conjugative transfer system protein TraE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.163981 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATCG CCAACAGCCA CGCGCAAAGC CAGCGCGTTC TCAAGCAGCG CAACCTCCTC
GTCGCCATCG CCGGCGTGCT CGCAGCGCTT ACCGCCATCC TCTTCCTGAT GGTTGCGACC
CGCGATCGGG AGATCGTCCT GCAGCCGATC CTGCGGTCGC CGCTCACAAT CAGCAGCGCC
GGGGTCAGCC GCGAGTATCT CGAGATGGTT ACCCGTGATG CCGCGGTGCT GACCCTCGAT
CGATCGCCCA GCAACCTGGA ATACTGGATG AAGTCGGTCC TCGATATCAC GGCGCCAAGC
GCACAGGGGC GGCTCAAGGC GGACCTTCTC AAGATCGTCA ACGAGCAGCG CGGATCCTCG
ATCGCGCAGT TCTTCGCGAT CCAGTCGATG AAGCTCGATC CGGACAATCT GACCTCGGAC
GTGACGGGCG ACCTGCACAC GATCGTAGGG AGCAAGGTCG TCTCCAAGGA CCGCCGGACC
TTCCGCTTCA AATGGAAATA TTCGGGCGTC TCGCTGCAGC TCGTCGGCTT CGGGATGGTG
TCCAAAGCCG AGGAAGGAGA TCAATGA
|
|---|
| Protein sequence | MEIANSHAQS QRVLKQRNLL VAIAGVLAAL TAILFLMVAT RDREIVLQPI LRSPLTISSA
GVSREYLEMV TRDAAVLTLD RSPSNLEYWM KSVLDITAPS AQGRLKADLL KIVNEQRGSS
IAQFFAIQSM KLDPDNLTSD VTGDLHTIVG SKVVSKDRRT FRFKWKYSGV SLQLVGFGMV
SKAEEGDQ
|
|---|
| |