| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5361 |
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| Symbol | |
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| ID | 5195590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | + |
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| Start bp | 269613 |
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| End bp | 270614 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640579288 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001260236 |
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| Protein GI | 148550797 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.716209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCG CGCTCCTTGC TGCACCGCTG CTCACCATCA TCCTTGCAGC CCCGCTTGCC
GCCGCCAGCC CGCAAGGTTC GCCGCGCACC GTTCAACTCA TCACCATGGG CGTGCCCGCG
CCGCCACGCC TGTCGGCCGC TGCGGGCACA GATGGCGCAC ACGGCCCGGA AAGGCCGGCG
GTAGACGAAG GCGCCCCACC CGCCGCAGGC AGTCCGGCCG CGCTTCCAGC GTCGTTTAGC
GTTCATGACC TCAGCCGCAA ATGGGTGCAG TTCCAGATGG CGCAGACTTA TGGGCAAGCG
GCCGTGGCCC CCGGCGAGAC CGCGCCGGTC GACGTGGCGG CTACCGGGGC TGCGCTGCCA
GTTGCGGCCG CGCCCGGCGT CTTTGCCGAG CCGACGCTGG AGCCGATACC CGTTCCTGCG
TGGATGCGCG GCGGACTGGC CTTTGCCAGC GCCGCAACCC GCTACAAGCC GGGGTGCTAC
GCCGCAGGCT ATCGGCCAGC CGGCTTTCTC AGTGCGCAGG CGGAGATCCG CCGGGCGGGC
TATTACGGGA TGATGAGCGC GATCGCGTGC CAATATGGCC TCCCGGTCGG CCTTTTCGAC
GCCATGATCA TCCGGGAGAG CCGCTACAAT GACCGGGCCG TTTCGCCGAA AAATGCCTAT
GGATTGACGC AGCTCATGCC CGGCACGGCC GCGGGGTTGG GCGTGGATCG CTACGATATC
GAGCAGAATC TGCACGGCGG CGCGCGCTAT CTGCGCAGCC AGCTCGATCG CTTTGGCCAG
GTCCATCTGG CCTTGGCGGC TTATAATGCC GGGCCGGGCC GGGTGCGGGG CGGCCAGGTG
CCGCGCATCG CCGAGACCCA GGCCTATGTC GACGACATTC TCCTCAACTG GCGGCGTCTG
AGTGGTTTCA CGCGGACGGC CAATGTCACC GGCCGATCGT TGCCGCCGAC TCCCACATCT
CCGCGTTTCA ATGGACGCAG CGCGGTCGTC TCGCGCTTCT GA
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| Protein sequence | MKTALLAAPL LTIILAAPLA AASPQGSPRT VQLITMGVPA PPRLSAAAGT DGAHGPERPA
VDEGAPPAAG SPAALPASFS VHDLSRKWVQ FQMAQTYGQA AVAPGETAPV DVAATGAALP
VAAAPGVFAE PTLEPIPVPA WMRGGLAFAS AATRYKPGCY AAGYRPAGFL SAQAEIRRAG
YYGMMSAIAC QYGLPVGLFD AMIIRESRYN DRAVSPKNAY GLTQLMPGTA AGLGVDRYDI
EQNLHGGARY LRSQLDRFGQ VHLALAAYNA GPGRVRGGQV PRIAETQAYV DDILLNWRRL
SGFTRTANVT GRSLPPTPTS PRFNGRSAVV SRF
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