| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5300 |
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| Symbol | |
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| ID | 5195702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | + |
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| Start bp | 198195 |
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| End bp | 200327 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640579227 |
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| Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001260175 |
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| Protein GI | 148550736 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCAG CTGTCCGTCT TCTCCGCGTT TCTGTGCCAC GGCAGTATCT TTGGCCGCTC
TTGTCGCTGC TTGGCGTATG CTTCGGTTTC ATCTTCCTGC TCATTTTCTT GAGTACCCGC
GCACAGGATG CCCAGCAGCT CGAGCGGGAG CGCCAGGCGC TCGGGGGCGT GTTCGCCACC
GCGTCCGCGA TGGTGCAGCA CGATCTGCAG GATTACGCCA AATGGGACGA TGCCGTGCGT
CACATCGGCT CGAGGTTCGA TGCGGCCTGG ATGGACGACA ATGTCGTGGC CTATCTGGGC
CGCACCCAGG GATATTCCGA CATCTTCGTG CTCGGCGCGG ACGATCGGAC CCTTTACAGC
TTTAAAGACC GGAAGAGCGC CGCGAAGACC GCTCACCTGC GTCTTGGCGC CGACTTCGTC
CGCTCGATCG CCGAAGTGCG GCGCTTGCCG CCTGAGGGCA GCCCGATCGT CAGTGGCTTC
ACGCGCTCGG GCCAGCAGAT CATGGTCTAT GCCACGGCCG CCGTGGTGCC CTTGACGGGT
AAGATCGCGG CGCCCCGAGG GCCGACCCGC CTTCTGGTCA TCGCCCGGCA CGTCGACGAG
GCGTTCTTGG CGGACCTCAC GCGCGAACTC AATGTCCACG ATGTGCGGCT GACGCTTGGG
AACCGGACAG CCGGAATGGA CGCCATCGCC ATCAAGGGCC GGTCGGGCGA ACGGATCGCC
TGGCTGGAAT GGCGGTCGCA TCATCCGGGT GCATCGCTGA GGCAGCATCT GGTGCCGGCG
ATCCTGGCGG TGGCCTTCGT CGCCTTTGTG GCAGCCGGCC TAATTCTTCG CCGGGGCGGC
CAGTCGATCG AGGCTTTGCG CGCAAGCGAG CTTCTTGCCC GGCATCTGTC GGATCACGAT
ACCTTGACCG AACTGCCCAA TCGCCGCGCG CTAGGGGAGC GGCTGGGCGA GCTTGTCGCG
GCAAGGCAAG GACTGGCCCT GCTGTTCCTC GATCTCGACG GGTTCAAGGA CGCCAATGAT
GTCTACGGCC ATAGTGCCGG CGATCTCCTG CTCAAGGAAG CCGCCGGTCG CCTGAAGGCC
GCGGCGGGAG AGGCCTTCAT CGCGCGCGCG GGCGGCGACG AGTTTGCCGT TCTCTTGAGA
TCGCCATCGC CTGGCGCGGC GGCCGCGACA TGCGAGGCCA TTCTCGAAGC GTTCTCGACG
CCCTTCAAGG TTGGCGCCTA CAGCATCACG ATCGGGACCA GCATCGGCTA TTTCGAGACC
GACACATCCT GCGACGGCGC GGAAGAGTCC ATTCGCAAGG CGGACGTCGC CATGTATGCC
GCCAAGGATG CGGGCAGGCA CTGCGCGCGG GTTTACCACC CCTCGCTCGA CGAAAGCCAT
GAACGGCGCC AGCGGCTCGA GCAGGATCTC AAGCGCGCGG TCGAGGACGA AGAGATCTAT
GTCCGCTATC AACCGATCGT CGATGCGCAG TCGGGTGAAG TCGTCGCCGT CGAGGCGCTG
GCGCGCTGGT CTCATCCTGT CCATGGCGAT GTTCCGCCCG ACGTGTTCAT TCCGATCGCC
GAAATCAGCG GGCTGATCAA CGCGATCGGC CGCCAGGTGC TTCTCCATGC GTGCCGGGAA
ATGCGCGAGA CCGGGCTCGA TCTGGCCGTC AACCTGTCGC CAGCGCAATT CTGGGATGGC
AATCTCTACG ACGAGGTTCA GCAGGTCCTG GAACGGACCG GGTTTCCTCC CGAGCGGCTG
GAGCTGGAAA TCACGGAAAG CTTGCTGCTG CGCCGTCCCC AGGTCGCCGC GGCGGTGATC
GACCGGCTGC GCTCACTCGG TATCCGCATG GCGCTCGACG ACTTTGGCAC GGGGTTCGCG
AGCATCGCCT ATCTACAGCA ACTCACGATC GACCGGCTCA AGATCGACAG GTCGTTCCTT
GCTCCGCTGG AATCGCAGCC TGACATGCGA GAGGTGCTGA TCTCCATCGT CGGCCTGGCG
AAGGCCTATC ATCTTGAAGT CTGTGCCGAA GGGATCGAGA CGCCGGGACA GGCGCAGCTT
GCGCGCATCG CGGGCTGCGG CCGCTTGCAA GGTTGGCTGT TCGGGCGTCC GCAAGCCGCG
AGCGCCTTCC AGCCCGTGGC CTTGCGAGCT TAG
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| Protein sequence | MPAAVRLLRV SVPRQYLWPL LSLLGVCFGF IFLLIFLSTR AQDAQQLERE RQALGGVFAT
ASAMVQHDLQ DYAKWDDAVR HIGSRFDAAW MDDNVVAYLG RTQGYSDIFV LGADDRTLYS
FKDRKSAAKT AHLRLGADFV RSIAEVRRLP PEGSPIVSGF TRSGQQIMVY ATAAVVPLTG
KIAAPRGPTR LLVIARHVDE AFLADLTREL NVHDVRLTLG NRTAGMDAIA IKGRSGERIA
WLEWRSHHPG ASLRQHLVPA ILAVAFVAFV AAGLILRRGG QSIEALRASE LLARHLSDHD
TLTELPNRRA LGERLGELVA ARQGLALLFL DLDGFKDAND VYGHSAGDLL LKEAAGRLKA
AAGEAFIARA GGDEFAVLLR SPSPGAAAAT CEAILEAFST PFKVGAYSIT IGTSIGYFET
DTSCDGAEES IRKADVAMYA AKDAGRHCAR VYHPSLDESH ERRQRLEQDL KRAVEDEEIY
VRYQPIVDAQ SGEVVAVEAL ARWSHPVHGD VPPDVFIPIA EISGLINAIG RQVLLHACRE
MRETGLDLAV NLSPAQFWDG NLYDEVQQVL ERTGFPPERL ELEITESLLL RRPQVAAAVI
DRLRSLGIRM ALDDFGTGFA SIAYLQQLTI DRLKIDRSFL APLESQPDMR EVLISIVGLA
KAYHLEVCAE GIETPGQAQL ARIAGCGRLQ GWLFGRPQAA SAFQPVALRA
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