| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5282 |
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| Symbol | |
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| ID | 5195818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | + |
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| Start bp | 181186 |
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| End bp | 183162 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640579209 |
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| Product | DNA ligase D |
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| Protein accession | YP_001260157 |
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| Protein GI | 148550718 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.889453 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTTGC CGCGATCGGC GACACGTGGG GCGTCGGTCG GCGAGCCGAG TCCGGGACGC
GCTGGAACGA GTCCGGCGCT CGCGCACTTT GGACTCCATG AAGAACAACG GCCATCCATC
ATGGCGCGCA TGACCGCAGC GCCAAGGAAA GCGGCTTCCA CCAGCCGCGC GCCGCCCTTC
CGCGCAGTGC AACTCGCAAC GCTGGTCGAC ACGGTTCCTA CCGGCAACCG CTGGCTGCAC
GAGATGAAGT ATGACGGTTA CCGCGTGCTG CTGAGCGTCG GCGGGGGCGA GGCCGTTGCC
TATACCCGCT CGGGTCTCGA CTGGTCGGAG AAGTTTAGCG GACTGGTTGC CGACGCCCTG
AAGCTGAAGG TTTCCTCCGC GCTCATCGAC GGCGAGGCGG TCGTGCTCGA TGCCGACGGC
CGCTCGAGTT TCCAGGCCCT GCAAAACGCG CTCAAAGGGG CGCCGGCTTC GATCGATTAT
TTCGCGTTCG ACCTGCTGGA GCTCGACGGC GAGGATCTAA CCCAGTTGCC ACTCACGGAG
CGCAAGGCGA AGCTCGCGAA GATCCTGCCC AAGGGCAAGT CGCGGTTGCG CTATTCGGAT
CACATTGCCG GCAATGGCGA GAAGTTGCTC GACCAGTTCT GCGCGGCGGG CCTCGAAGGG
GTGATCTCGA AGCGGGCCGA CGGCCGCTAT GTCGGCTCGC GATCGGGCGG CTGGCTGAAG
ACCAAATGCA TCAAGCGGCA GGAGTTCGTC GTGGTCGGCT GGACCCCTTC GGACAAGTCG
CGGTTATTCC GATCGCTGAT CCTGGGTGTC CATGAGGACG GCGTCCTGCG CTATGCCGGC
AAGGTCGGCA CCGGCTTCGA TACCCAGGAG ATCATCGACC TGATGGCGGT GATGGCGCCG
CTCGAGCAGG AGGCGCCGAC CGTCAAGGCG CCGCGCGCAG AGGTGCGCGG GGCGCACTGG
CTGCGGCCAA CGCTGGTCGC AGAAATTGCA TTTACCGAAA TGACAAACGA AGGGACCCTC
CGGCATCCGT CCTTTCTGGG CCTGCGAGAA GACAAGAAGC CCGAGGCTGT GGTCGTCGAG
ACCGAGGCGC CGGTTGAGGC GGTGACGGCC GAGACCTCGT CGATCAAGAT CACCAACCGC
GACCGTGTCA TTTTTCCCGA AGGGAAGCTT ACCAAGGGTC AGCTGGCCGA TTATTATACG
CAGGTCGCTC CGATCATGCT GCCCTGGATC GGTTCGCGGC CGATCAGCCT CGTTCGCTGC
CCGCAAGGCC GAGCCAAGAA ATGCTTCTTC CAGAAGCATG ACGCGGGCAG TTTTGGCGAC
GCTGTACGGC ATGTCGCCAT TCGCGAGAAG GACGGGCACG ACGAGCCCTA TCTCTATGTC
GATACCGCGG ACGGCCTGCT CACATGCGTA CAGATGGGCA CGATCGAGTT CCATGGTTGG
GGCGCCAGGA TCGAGGATGT CGAGAGGGCC GACCGGCTGG TCTTCGATCT TGATCCCGAC
GAGGGCCTGG ATTTCGAGAA TGTGCGCAGC GCCGCCTTCC ACTTTCGCGA GATCCTGCAG
TCGATCGGGC TCGAGACCTT CCCGATGGTG ACCGGCGGCA AGGGCGTCCA TGTGATCGCG
CCGCTTGTTC CGCAAGCGGA GTGGCCGGAG GTGAAAGACT TTGCGCATCG GCTGGCCCAA
GCGGTTGCCC AGAGTGACCC TGAGCATTTC ACGGCCGCCC TGCCGAAAGC GCAGCGCAAG
GGCCGCATCT TTGTCGACTA TCTTCGCAAC CAGCGCGGTG CGACGGCGGT CATGCCCTAT
GGGGTCCGCG CGCGCGAAGG CGCGCCGGTC GCCGTACCCA TCACATGGAA GGAAATGGAG
ACGATCGACA AGCCCTCGCA CTGGACCATT CGCGATGGCG CCGAACTGGT GAAGCGGGCC
GGCTCCAAGG CGCTCAGCGG TTGGGGCCGC GCCGACCAGA CCCTGCCTGA CCTGTGA
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| Protein sequence | MRLPRSATRG ASVGEPSPGR AGTSPALAHF GLHEEQRPSI MARMTAAPRK AASTSRAPPF
RAVQLATLVD TVPTGNRWLH EMKYDGYRVL LSVGGGEAVA YTRSGLDWSE KFSGLVADAL
KLKVSSALID GEAVVLDADG RSSFQALQNA LKGAPASIDY FAFDLLELDG EDLTQLPLTE
RKAKLAKILP KGKSRLRYSD HIAGNGEKLL DQFCAAGLEG VISKRADGRY VGSRSGGWLK
TKCIKRQEFV VVGWTPSDKS RLFRSLILGV HEDGVLRYAG KVGTGFDTQE IIDLMAVMAP
LEQEAPTVKA PRAEVRGAHW LRPTLVAEIA FTEMTNEGTL RHPSFLGLRE DKKPEAVVVE
TEAPVEAVTA ETSSIKITNR DRVIFPEGKL TKGQLADYYT QVAPIMLPWI GSRPISLVRC
PQGRAKKCFF QKHDAGSFGD AVRHVAIREK DGHDEPYLYV DTADGLLTCV QMGTIEFHGW
GARIEDVERA DRLVFDLDPD EGLDFENVRS AAFHFREILQ SIGLETFPMV TGGKGVHVIA
PLVPQAEWPE VKDFAHRLAQ AVAQSDPEHF TAALPKAQRK GRIFVDYLRN QRGATAVMPY
GVRAREGAPV AVPITWKEME TIDKPSHWTI RDGAELVKRA GSKALSGWGR ADQTLPDL
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