Gene Swit_5270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_5270 
Symbol 
ID5195733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009507 
Strand
Start bp165126 
End bp166805 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content66% 
IMG OID640579197 
Productsignal transduction histidine kinase 
Protein accessionYP_001260145 
Protein GI148550706 
COG category[T] Signal transduction mechanisms 
COG ID[COG0784] FOG: CheY-like receiver
[COG3920] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.909185 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAATG TGGTGCCTTT CGGGGCCACG TCGTCTGCCC ATCGCCCGCT CGAGCAAGCG 
GGCGGACCAT TCGCCGACAT CGACCTCATC CACTCGATCA GCGTCGCGCT GAGCGGCGAG
CAGGACCGCG TCGAGCTCTA TGGCAAGATT GTGGACGCGG CGATCACCAT CACCCAGTCG
CAGTTCGGTA CGATGCAGCT CGTCGTGCCG CCCGGCGATG TCTCGGGCCA TGCGGGCTGC
CTCCAGCTTC TCTGCTCGCG TGGGCTGCCG CCTGAGGCGG TGCAGTTCTG GCAGATCGTC
AGCCCCGCGG CTCACAGCAG TTGCACCAAG GCGCTCAAGA CCGGCAGCCG CGCGATCATT
CCCGATTATG AGGAATGGGA CGAAATCGCG GGCACCGAGG ATCTCGAGGC GTTCCGCCGC
ACCGCCATCC GATCCGCGCA GACCACGCCG CTTCTCGCGC GCGACGGACG CCTGCTCGGG
ATGATCTCGA CCCATTGGAC CGAGCCGCAC GAGCCCTCGC CGCGCGATCT CCGGCTCCTC
GACATCCTCG CCCGCCAGGC GGCCGATCTT CTCGAACGGA CGATTGCCGA CGAAGCGCTG
CGCGAACGCA AGGAGGAACT CGACCGGACC TGCGCGGCGC TGCGCGAATC CGAGCAGCTC
CGGAAGATGC TGACCGGCGA GCTCAGCCAC CGCGTCAAGA ACATGCTCGC AACCGTCCAG
GCAATCTCGA CACAGACCCT GCGCAACTGC AGCGATCCCG CCGAATTCGT CGAGAGCTTT
TCGGGCCGCA TCCAGTCGAT GGCCCGGGTC CACTCGCAGC TCAGCACCAC GGACTGGAAA
GGCACGGAGC TACGCGCCGT CGTCGAAGAG GGGATGAAAC TCGGACCCGT CGACGAGCCG
CAGATTGCCG CGTCAGGCCC CGACATCCAT CTCAATGCCA ACGCCGTGCC GAAGATGGCG
ATGATCCTGC ACGAGCTCGG CACCAATGCG CGCAAATACG GCGCTCTCTC TCGTGCCGGC
GGCACGGTCG ACATCCGTTG GACTGTCCGA CCGGGACAAC TCGCGCTCAG CTGGACCGAG
CGCGGTGGTC CCAGGGTCCA GGCGCCCGTC CGCCGCGGCT TTGGATCGCG GCTGATCGAA
GCGACCGTTC GCGGCGTTCA CGGCAATGCC GATATGAGCA TCGAGGCCGA GGGCGTACGC
TGGGAGATCC AGTTTCCGCT GCCGGACGAC GAGGACTCAG CAATCGAAGC TGGCAAGCGG
CGGGCGGGGC AGGGTTCGCT CGCCGAGCAG GCCGGCCTTG GGCCATCGCG CCAACCGGCA
TGGCACAATC TTGCAGGCAA GCACGTGCTT GTCGTCGAGG ACGAGCCGCT CCTGGCCCTC
GATATCGTCG GCCAGCTCGA GGACGCAGGT ACCATCATCG TCGGACCCGC CGCCGATCTG
CGGGCGGCGC TCGACCTCAT CGCACACCAT CGGATCGACA TCGCCCTGCT CGACGCCAAT
CTCTCGGGTG AACCGGTCGA CGATATCGCG CATGCGCTCG CCGCGCGGTC CATCCCCTTC
CTGTTCATGA GCGGCTATGG GCGCGAGAAC CTGCCCCCGG CTTTCCCGCA CATCGAACTG
CTCTCCAAGC CCTTCGACGC GCGGCAGCTT CTCACGCTTG CCGACAGGAT GCTTGCCTGA
 
Protein sequence
MSNVVPFGAT SSAHRPLEQA GGPFADIDLI HSISVALSGE QDRVELYGKI VDAAITITQS 
QFGTMQLVVP PGDVSGHAGC LQLLCSRGLP PEAVQFWQIV SPAAHSSCTK ALKTGSRAII
PDYEEWDEIA GTEDLEAFRR TAIRSAQTTP LLARDGRLLG MISTHWTEPH EPSPRDLRLL
DILARQAADL LERTIADEAL RERKEELDRT CAALRESEQL RKMLTGELSH RVKNMLATVQ
AISTQTLRNC SDPAEFVESF SGRIQSMARV HSQLSTTDWK GTELRAVVEE GMKLGPVDEP
QIAASGPDIH LNANAVPKMA MILHELGTNA RKYGALSRAG GTVDIRWTVR PGQLALSWTE
RGGPRVQAPV RRGFGSRLIE ATVRGVHGNA DMSIEAEGVR WEIQFPLPDD EDSAIEAGKR
RAGQGSLAEQ AGLGPSRQPA WHNLAGKHVL VVEDEPLLAL DIVGQLEDAG TIIVGPAADL
RAALDLIAHH RIDIALLDAN LSGEPVDDIA HALAARSIPF LFMSGYGREN LPPAFPHIEL
LSKPFDARQL LTLADRMLA