| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5251 |
|---|
| Symbol | |
|---|
| ID | 5195660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | + |
|---|
| Start bp | 141342 |
|---|
| End bp | 143057 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640579178 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001260126 |
|---|
| Protein GI | 148550687 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.782087 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGATT GGCAACCTGC GGAAGTCGCG CTCATCGAGG AAGTGGCCGC GCGGGTGTGG
GACGCAGTCG AGCGGGCCAA TGCGGTCGAC GACCTGCGCG CGCTCAATGC CGATCTGGAA
CGCCGGATCG CGGCGGCCGT GGCCGAGCGT GAGAAAGCCG AAGAGGCCTT GCGGCAAAGC
CAGAAGATGG AAGCGGTCGG CCAGCTCACC GGCGGGATCG CGCATGATTT CAACAATCTG
CTGACCATCG TCACTGGCAA TATCGACATG GCCAGCCGGG CACTCGAGGC GGCGGGCGTC
AACGATCCGC GCGCGCGCCG CGCGCTCGAC AATGCGATGA AGGGCGGCGA ACGCGCGGCG
GCGCTCACGC ACCGGCTGCT CGCTTTCTCG CGCCGCCAGC CGCTGGCGCC TAAGCCGACC
GATGCCGATC GGCTGGTCGC GGGCATGTCT GATCTCCTCG GTCGTTCGCT GGGCGAGACG
GTCAGCCTCG AGATCGTTAC CTCGCCGGGG CTCTGGCGGA TCGAGGCCGA CCAGAACCAG
CTTGAAAATG CGATCCTCAA TCTGGCCCTC AATGCGCGCG ACGCGATGCC CCAGGGCGGA
ACGCTGACGA TCGAGACGGC CAATGCCCGG CTGGGGGACG AATATAGCGC GCAGCATGCC
GAGGTGGCGC CTGGCCAATA TGTGGTGATC GCGGTGACCG ATACCGGTGA AGGTATGACC
CGCGAGACGC TGGCCCGGGT GTTCGAACCC TTTTTCACCA CCAAGGAGGT GGGCCGCGGC
ACGGGCCTGG GACTCTCGCA GGTCTACGGC TTCACCAAGC AGTCGGGCGG ACATGTGAAG
ATTTATTCGG AGGAGAATCA GGGCACCACC GTCAAGATTT ACCTGCCGCG CCTCGTTAGC
GATGGCGAAG TGGAGCCGGC CGCGGAGCAG GTGACCGACC TGGAGACCAG CCCGCGCCGG
GAGACCATCC TTGCTGTCGA GGATGATGAC GATGTACGCG CCTATACGGT CGAGTGCCTG
CGCGAACTCG GTTACCGGGT GCTCGAAGCC CATGACGGGC CCTCGGCGCT CGCGCTGATG
GAGCGGCAGG GAACTTCGGT GGACCTGCTG TTCACCGATG TGGTCATGCC CGGCATGTCG
GGCCGCGAGC TCGCGGACGA GCTGCGGCGA CGCCAGCCCG ATCTGCGCGT GCTCTACACC
TCGGGCTATA CGCGCAACGC CATCACCCAT GGCGGACGGC TGGACGAAGG CGTGGAGATG
ATCGCCAAGC CTTTCACCTA CCAGGCCTTG GCCATGAAAT TGCGGGACAT GCTAGAGGCT
GGCCGCACCA AGCGCGTGCT GGTGGTCGAC CACGATCCGA TGGTGCGGGC GCTGGTGGCC
GAATCCTTGG CCGGGGTCGA CTATACCGCC GACGAAGCCG CGACGGCGGC CGAGGCCTTG
ATGACGGTCC GGGCGGCACA GGGGCGCTTC GATGCCGTGG TGCTGGATCT CGCACTCCCC
GACAAGCCGG GCGACCTTGT GGCGGCCGAA TTGCGGGCGC TTCATGCCGA TCTACCGATT
CTGATCGCAG CGGACGCAGG CGCCGAGGCG CTCGCGGCGC GGTTCGCCGA GGATCGCTGC
ATCGCCGTCA TCGCCAAACC CTATACCGGC GGTCTGCTCA AGGAAGCGCT GGCCGATCTG
GGGATGCGAT GCGCGGTCGG GGACACGGGG CAATAG
|
|---|
| Protein sequence | MRDWQPAEVA LIEEVAARVW DAVERANAVD DLRALNADLE RRIAAAVAER EKAEEALRQS
QKMEAVGQLT GGIAHDFNNL LTIVTGNIDM ASRALEAAGV NDPRARRALD NAMKGGERAA
ALTHRLLAFS RRQPLAPKPT DADRLVAGMS DLLGRSLGET VSLEIVTSPG LWRIEADQNQ
LENAILNLAL NARDAMPQGG TLTIETANAR LGDEYSAQHA EVAPGQYVVI AVTDTGEGMT
RETLARVFEP FFTTKEVGRG TGLGLSQVYG FTKQSGGHVK IYSEENQGTT VKIYLPRLVS
DGEVEPAAEQ VTDLETSPRR ETILAVEDDD DVRAYTVECL RELGYRVLEA HDGPSALALM
ERQGTSVDLL FTDVVMPGMS GRELADELRR RQPDLRVLYT SGYTRNAITH GGRLDEGVEM
IAKPFTYQAL AMKLRDMLEA GRTKRVLVVD HDPMVRALVA ESLAGVDYTA DEAATAAEAL
MTVRAAQGRF DAVVLDLALP DKPGDLVAAE LRALHADLPI LIAADAGAEA LAARFAEDRC
IAVIAKPYTG GLLKEALADL GMRCAVGDTG Q
|
|---|
| |