| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5224 |
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| Symbol | |
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| ID | 5195662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | - |
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| Start bp | 116438 |
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| End bp | 118729 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640579152 |
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| Product | hypothetical protein |
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| Protein accession | YP_001260100 |
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| Protein GI | 148550661 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.440863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.967503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTA AAAACGATAT CCGCACAGAC GGCCGGGCCA TCCCCTTGAC CCATCACAGC
GCGCGCGGAC GGGTGCAGCG CAATTCGGGC AATTTTACCC GCGGCTCGCA GCTTCTCACC
CACGAACTTC TGATGTGGTT CTCGGGTGCG AAACTGCCCA TCCTGATGTG GTTCTTCCTC
TTCGCGGCCG CCTGGTTCGT GATCATGTCG ATCAAGCTCG ACGAGCACGG CTTCCAGCTC
ATCTGCATGA AGATTTATGC CGCGCTCTGG AACTGGGTCG ACCTCAACCC CAACAAGCGC
GTCAACGTCA CCCTGCCGAG CGGCGAGGTC ATGCGTACGG TGATGCCCGC GGTGCCTTAT
ATCGCCGAGG TCATCCAGGC CTGGAAGATC GCGATGAAAG GCCTTCTGGC GGCCTTCTTC
GTATCCATCT TCATCACCAT CCCGGTCGCA CTCTGGTTCG TCGATCTTTC GCGCCGGCGG
GGCAAGACGA TCCTTCAGGA ACGCCACGAG CGCGGAGCCA TGCTGGTCGC CCGCCACGTG
CTTCTCAACG AGATCAGCCA GCACAATTAC GCGAAGTTCG AAGAGGAGGC GCAGGATCGC
CTGCCCGGCC TCGCCCCGGC CAAGATTCTC GACATGCCGT TTCGTGCACG CAAGGCGGCG
GGCATCCATC ACCCCTATAC GCTTGCGGGC ATCCCTTATC CGCATCGCAC CGAGCAGTCG
CATACCATGC TCATCGGTAC GACCGGATCG GGCAAGACGA CCGAACTCAG GAGCCTGGTT
TCGCAGGTGC GAGCCCGCGA GGACACGGCC GTCATCTTCG ATCTCACCGG CGCCTATGTC
GAAGCCTTCT ACGATTCCGC GCGCGATACG ATCCTCAACC CGATGGACGC GCGCTGCCCG
GCCTGGTCGA TCTTCAACGA CTGCACCACG CATAGCGAAT TCACTGCCGC AGCGGCGGCG
CTCATTCCCT CGGACGGCGG CTCTGCCGAA CCCTTCTGGG CGCTCGCGGC GCGCACCCTC
TTCATCGAGA TGTGCATCCG GCTCCAGGAG CGCGGCGCGA CGACCAATCT CGCGCTCTCC
GAGAACCTGA TGACGGCCGA CCTGAAGCGG GTTCACCGTT TCCTTGCCAA CACGATCGCG
GACCCGCTCA CCGCGCCGGA AGCCGCACGC ATGGCGGAAT CGATCCGCGC GGTCTTCAAT
ACCAATGCGC AGGTGCTGCG CTTCCTTCCC GACGAGGGGC CACGCTTCTC GATCCGCGAC
TGGACCACGA CCGAGAAGAA GCCCGGCGCG ATCCTGTTCA TCACCTCGAA CTATGTCGAT
CTGGCGATGA ACCGGGCGCT GCTGACGCTG TGGATGGACA TCGCCATCAA CCGCCTCATG
ACCATGCCGC GCACCCGCGA TCTGCGCACC TGGTTCATGT TCGACGAACT CGGCGCACTC
CATCGTCTGC CCGCGATCGA GAATGGTCTC CAGACCGCCC GCGCGTTCGG CGGCGCGATG
ATCCTGGGGA TCCACAGCTT CGAAAAACTG ATCGAGGTCT ATGGCGAGCA GGGTGCCCGC
AATCTCGCCT CGCTCGCGCG CTCCAAGCTG ATGCTCGCAA CCGCCGATCT CGACACCGCC
GAGCAATGCG CGCGCTACAT CGGCAACCGC GAAGTACGGC AGATGGATGA AGCCTATAGC
TACGGCTACA ACAACACGCG CGACGCCGCG ACGCTGACGC CGCGCAAGCA GGTCGAGCCG
CTCGTCATCG CGGACGACAT CACCAACCTG CCCTCGATGC ATGGTTTCGT GAAATTCCCT
GATGGCTTCC CCGCGGCGCG CATCCAGCTC CAGTGGAAAG ACTACCCCCA GGTCGCCCAG
GGCTTCATCG CCCGTCCCAA TCTCCAGCCG GTGCGATCAA GGCGCGGAGA GGAGGCGTTC
GAGGGGAGCG ATGGGGGCGA AGCGGGCGGG CGCGATGGCG CCGCGCAGGT GATCGGGGAG
GTTGCCGATC CCGTCAATCT GGCCAAGGAA CTTGCCGCCA ATATCCTGTC GGCCGAGGTC
GAGGATGAGC ATGATGAAGC GGCCCGCCGG GCGCAGCGTG CGGCCGAGAG CGACGAGCGG
CCAGCAACCC CCACGCACGC CGCGGACAGG GCACAGGCGG CGCGCGCTGC GACCGGGGAT
CCTCAGACCG TGCCGCGCGA TCGCGACGGG CGGGGTCAAC CTGCGCCAGT GCCCCAGGTC
GAGGATCAGA CGCTGGTCGA GCTAAGGCAG GCGTTCGGGC GCGAGGACGA CGGCATGGAC
ATGGGGATCT GA
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| Protein sequence | MARKNDIRTD GRAIPLTHHS ARGRVQRNSG NFTRGSQLLT HELLMWFSGA KLPILMWFFL
FAAAWFVIMS IKLDEHGFQL ICMKIYAALW NWVDLNPNKR VNVTLPSGEV MRTVMPAVPY
IAEVIQAWKI AMKGLLAAFF VSIFITIPVA LWFVDLSRRR GKTILQERHE RGAMLVARHV
LLNEISQHNY AKFEEEAQDR LPGLAPAKIL DMPFRARKAA GIHHPYTLAG IPYPHRTEQS
HTMLIGTTGS GKTTELRSLV SQVRAREDTA VIFDLTGAYV EAFYDSARDT ILNPMDARCP
AWSIFNDCTT HSEFTAAAAA LIPSDGGSAE PFWALAARTL FIEMCIRLQE RGATTNLALS
ENLMTADLKR VHRFLANTIA DPLTAPEAAR MAESIRAVFN TNAQVLRFLP DEGPRFSIRD
WTTTEKKPGA ILFITSNYVD LAMNRALLTL WMDIAINRLM TMPRTRDLRT WFMFDELGAL
HRLPAIENGL QTARAFGGAM ILGIHSFEKL IEVYGEQGAR NLASLARSKL MLATADLDTA
EQCARYIGNR EVRQMDEAYS YGYNNTRDAA TLTPRKQVEP LVIADDITNL PSMHGFVKFP
DGFPAARIQL QWKDYPQVAQ GFIARPNLQP VRSRRGEEAF EGSDGGEAGG RDGAAQVIGE
VADPVNLAKE LAANILSAEV EDEHDEAARR AQRAAESDER PATPTHAADR AQAARAATGD
PQTVPRDRDG RGQPAPVPQV EDQTLVELRQ AFGREDDGMD MGI
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