Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5223 |
Symbol | |
ID | 5195790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009507 |
Strand | - |
Start bp | 113404 |
End bp | 116436 |
Gene Length | 3033 bp |
Protein Length | 1010 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640579151 |
Product | conjugative relaxase region-like protein |
Protein accession | YP_001260099 |
Protein GI | 148550660 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.260004 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTCGG TCGCCTCGGT CCGCTCGGCT TCGGGCGCCG CGAATTATTT CGCGAAGGAC GACTATTACA CCGTCGAAGG ATCCTCCGAG ATCAGCGCCT GGGGCGGGGA GGGCGCGGGG GCGCTCGGGC TGTCGGGAGA AGTGGGTAAG GATGCGTTCG AGGGCATGCT CAACGGCATC CTGCCTTCGG GAGAAGGGGT GGCTCAAGTA GAGAACCGCC GGGCCGGCCT CGACCTCACC TTCTCCATGC CCAAGTCAGC CTCGATCCTG GCCTATGTGG CGGGCGACAA GCGCATTCTC GCCGCCAACA TGGCGGCGGT CCAGAAGACG ATGGCCTGGG TCGAGAAAAA CCTCGCCGAA GGTCGCAAGG ATATCGGCGG GCGAACCGTC CCTGTCGCGA CCGGCAACCT CGTCTATGCC CTCTTCCAGC ACGACACGAG CCGTGCCCTC GATCCCCAGG GGCATATCCA TGCAGTGATC GCCAACCTGA CCCGTCTGCC CGACGGCAAA TGGCAAGCGC TCCACGCGGA CAAGATCTGG AGCCACAACA CCGTCATCGG CTCGATCTAC CACGCCTATC TGCGCGAAGG CATCGAGCAG CTCGGTTTCA GGATCGAGGC GCTCGGCAAG CACGGCACCT TCGAGATCGC CGGCGTACCG CGCAAGGTGA TTGATGCCTA CAGCCAGCGC CGCGAAGCGA TCCTCGAAAA GGCGGCGGCG CTTGGCATCG TCTCGCACAA GGGCCGCGAC CAGATCACCA CCAATACCCG CGATCCCAAG CTCAATGTCA AGGATCGCGA CGCCCTCAAG CAGGAATGGA TCGACAAGGC GGCGTCGCTC GGATTCGACG GAAAGGCCCT CGTCGAGGGC GCCCTGGCGC GGTCCGATCG CCATGGGGCG CTCGGACCGC TCGAACGCGG CTACAAGGCG GTGACCGAGG CGATCGCCGC CGGGCGCGAA AAGCTCGGCG ACCTTGTCCG GCCCGCGGAT CCTTTGGTCG ATCGCGGCCT TGCCCGCGTC ACCCAGTCGC CCGCCATCGC GCGGGCCCAG CTCGCGGTCG CCTCGGCAGT CCGTATTCAT AGCGAACGCG AGGCGGCCTT TCCCATCCAT CGCCTTGCCA AGACCGCGCT CGACCTTGGC CTCAAGGACG TGACGATCGA TCGGATCGAA CAGCGGATCC AGCAACTCGT CGCGCGCGGC ACGCTGCTCA GGGGACAGGA GCGCGCAGCT GACTTCGTCA CCACCCGGCA GGCACTAGCC ACGGAAACCC AGATCCTGAC CCAGGTAGAG GCGGGCCGCG GACAGGCGAA CCCAATCATC GACGCGTCCG AGGCGCCGGG CCGCCTGCAG GCCGCAGCGA CGCAGCCCCT CAATACAGGC CAGCTCGCCG CCGCTACCTT GATCCTCGGC TCGGCCGACC GCACGGTCTC GATCCAGGGC ATCGCCGGCG CCGGCAAGTC GACGATGCTT CAGGCCGTCG CCCGCGTGGC GGAGGCGGAA GGACGCGCCA TCACCGGCCT TGCCTTCCAG AACAAGATGG TCGCCGACCT GGCCGAAGGC GCAGGCGTCC CTGCGCAAAC CATCGCCTCT TTCGTGCTTG CCCATGAACG GTATGTCGCC GAACCGCAGG GCCCGGGCTA TGATGCGGCG CGGGCGGCAC ATGCCGGATC GATGCTGGTC GTCGACGAGA CCTCGATGGT GTCGTCGAAC GATATGCTCA AGCTGCACGC CATCGTCGAG ACGCTTGGCG TCGACAAGCT CGTGCTGGTT GGTGACCGGC AGCAGCTCTC CTCGATCGAT GCGGGCAAAT CCTTCGCCAT GATCCAGGCG GCGGGCGGCA CGCTGGCGCG CATGGACGAG AATATCCGCC AGCGGACCGA CGTCCTGCGC ACCGTCGCCG CGCTTGCCAA TATCGGCAAG GCAAGCGAGG CGATGCGGGT GCTGGGCGAC AAGGTCATCG AAGCCTCCCA GCCCGCAGAA CATGCCGCCG ATCTCTGGCT GGCGCTCGAT CCCGCGGAGC GCCAGGCGAC CGCGGTCTTT GCCTCGGGAC GCGAGGCACG TGCGGCGATC AACGAGAGGA TCCAGGCGGG TCTTGCCGCC GAAGGATCGC TGGAAGGGGA GGGCATCCAT CTCACGGTCT ATGAGCGGGT CAACACGACG CGCGAGGAAC TGCGCTACGC GGCCACCTAC CGCGCCGGCA TGACGCTCGA GGTCGGTCGG GGCGGCGGCC AGGACATAGG GCTCCGCGCC GGGCGCTACG ACGTCCTGGC TGTCCACGCC AATGGCAAGG TCGAGCTGGG CGAAGGCCGC CGCCGTATAC GTTTCGATCC GCTGAAATTG TCGCCGACCG AGACACGCGA TCGCCTCCAG CTGACCGAGA AGAAGGATCT CCACTTGCGG GCCGGTGACC GCATACGCTG GACGGCCAAC GACAAGCCGC GCGGCCTGAC CAACGCCTCG CTCGCCCGGG TTGTCGCCGT CGATCGCGAC AGCGTGACAG TCGAGACGGC GGGGAGGGAC CGGCTCGTGC TCGCGTTTGG CGATCCCATG CTGAGCCGGG TGGACCTGGC CTATGCGCTC AACATGCACA TGGCGCAGGG GATCACCACC GACAAGGCGA TCACGGTCAT GGATAGCCAT GAGCGCAACC TGTCGAACCA GCGCCTCTTC AACGTCGGCG TCACCCGCGT GCGCGACGAC CTCACCATGG TGGTCGACGA CAAGGCGAAG CTCGAGCGGC AACTCGACCA CAACCCCGGG AACAAGACCT CTGCGCTCGA GACCCTGGGC CGGCTCGAAA TCGACGGTCC GGGAAGGGCG CAGGCATCCG GCCCATTCGA TCCGGGACCT GTCGAAGGCG GACCTGGTCC CAAAGCGGCC GAAGGACTCG ATGGCTTTCC GCCGGTGCCC CCGGCCGAAG GGCAGGTGGC CGCCAGGGCG AAGTCTGATG ATCTGAGCGC GCCGCGCCTC AAGCCCGAAC AAGCCGATCT GCTGCCCCCG CTGCCCGAAC GCAGTCTGGG CCTCGATTTG TAA
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Protein sequence | MLSVASVRSA SGAANYFAKD DYYTVEGSSE ISAWGGEGAG ALGLSGEVGK DAFEGMLNGI LPSGEGVAQV ENRRAGLDLT FSMPKSASIL AYVAGDKRIL AANMAAVQKT MAWVEKNLAE GRKDIGGRTV PVATGNLVYA LFQHDTSRAL DPQGHIHAVI ANLTRLPDGK WQALHADKIW SHNTVIGSIY HAYLREGIEQ LGFRIEALGK HGTFEIAGVP RKVIDAYSQR REAILEKAAA LGIVSHKGRD QITTNTRDPK LNVKDRDALK QEWIDKAASL GFDGKALVEG ALARSDRHGA LGPLERGYKA VTEAIAAGRE KLGDLVRPAD PLVDRGLARV TQSPAIARAQ LAVASAVRIH SEREAAFPIH RLAKTALDLG LKDVTIDRIE QRIQQLVARG TLLRGQERAA DFVTTRQALA TETQILTQVE AGRGQANPII DASEAPGRLQ AAATQPLNTG QLAAATLILG SADRTVSIQG IAGAGKSTML QAVARVAEAE GRAITGLAFQ NKMVADLAEG AGVPAQTIAS FVLAHERYVA EPQGPGYDAA RAAHAGSMLV VDETSMVSSN DMLKLHAIVE TLGVDKLVLV GDRQQLSSID AGKSFAMIQA AGGTLARMDE NIRQRTDVLR TVAALANIGK ASEAMRVLGD KVIEASQPAE HAADLWLALD PAERQATAVF ASGREARAAI NERIQAGLAA EGSLEGEGIH LTVYERVNTT REELRYAATY RAGMTLEVGR GGGQDIGLRA GRYDVLAVHA NGKVELGEGR RRIRFDPLKL SPTETRDRLQ LTEKKDLHLR AGDRIRWTAN DKPRGLTNAS LARVVAVDRD SVTVETAGRD RLVLAFGDPM LSRVDLAYAL NMHMAQGITT DKAITVMDSH ERNLSNQRLF NVGVTRVRDD LTMVVDDKAK LERQLDHNPG NKTSALETLG RLEIDGPGRA QASGPFDPGP VEGGPGPKAA EGLDGFPPVP PAEGQVAARA KSDDLSAPRL KPEQADLLPP LPERSLGLDL
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