| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5214 |
|---|
| Symbol | |
|---|
| ID | 5195679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | + |
|---|
| Start bp | 104722 |
|---|
| End bp | 106431 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640579142 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001260090 |
|---|
| Protein GI | 148550651 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.0668054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.312541 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAAC AGCTTGCTCA GACATTCCTT CTGATCGCGG CTGCATTTGT GGCAGTTGCC
ATCCTGGCGA GGCTCCGCCT GTCGCCGGTG TTGGGCTATC TCGCCGCCGG CCTGCTCCTG
GGCCCCCATG GCATAGGCGC AGTAACCGAC AGCGAAGGCA CCCATTTTTT CGGCGAGCTC
GGCATCGCTC TCCTCATGTT CGTGATTGGC CTTGAATTTT CCGTGCCTCG GCTGCTGTCC
AGCGGGGGCG CCATGATCGG GCTCGGGTTC GGAACCGTGG CAGGCGCAAC ACTGCTGGCG
GGAGCTGCGA GCCATTTCCT CGTAGGATTG CCGCTTCTGC CAGCGGCCCT CCTGGGCGGC
GCCATCGCCA TGTCATCGAC CGCCATCATC CAAAAGCATC TCGTCGACAC CGACGCGGTA
TCGAGCCGCC ACGGCGTGGC TGCGACCGGC ATAGTCCTGT TTGAGGACCT GGTCGCTTTG
ATCCTGCTGT CGCTCATTGC TGCCCTTCCA GACGCGGCCA ACGAGGTCGA GATGGAAAAG
GTACTGCTGC GCATGGGTGT CAGCTTCGTG GCATTGGCGG GCGTGGCGCT TCTCGCACGG
CGCACGCTTG GCCGTTTGCT CGGGTGGGTC GCGAGATCCG GCCCGGACGA AACCTTCCTG
CTGGGCGTGC TGACGCTTGT TGTGGGCGCG TCGCTTGCAG CGGAAAAGAT CGGACTGTCG
CTTCCTATCG GCGCCTTCGT AGTCGGGATG ATGGTCGGCG AAAGTGACTT CAGGCACCAG
CTCGAAGAGG AAATCCGGCC ATTTCGCGAT CTGCTGCTGG GCGTCTTCTT CGTGACGATC
GGCATGTCGG TCGACTGGTC GCAGATCCTG GCCCAGCCGG CTGTCACCTT TCTCGTTCTG
GCCGCGATCC TTGTCGTCAA GTTCCTGGTC GTCTTTGGCG TCACCCGTCT CTCAGGCCTC
CCGGCAAGCA GCGCGGTCAA GACCGGCTTG CTTCTGGCGC ATTCGGGTGA GCTTGGGCTA
CTCATCGTGG GTCGGTCGCT CGATAGCGCC CTTCTGTCGC CCGCGATCGG CCAGCCCGTC
CTGGGCGCGA TCGCCGCGAG CATGCTCGTC GGACCGATCC TGGCGCAGTG GAGCGACCGG
GCCGGAGATC TCATCCTGCG GAGCCGGGAT CCGCGCGGCG CGGAGATCGA AACAGCGGTT
CGCACAACAT CTCAGGAGCT CAAGGGTCAC GTCGTGCTTG CCGGCTGCGG CCCCGTGGGC
CGTCTGGTCG CGCTCACACT CGAGGCGAGC GAAATTCCAT ACCTGGCGAT CGAGCGAAAC
GTGGAGCGCC TTCGCCGCGC CCAACAGGAC GGTCATAAAG CGGTTTTCGG CGACGCCAGC
CGAGCGGGAA TACTCAAGGC AGCCGGCGTC GATCGCGCCG CAGCCATCAT CGTGCTTGTC
AACAATTGGC ATCGGTCGGT GCGCATCATT CGCGAAGCCA AGCGCCTGAA CCCCGCGATC
CATGTGATCG CCAGCCTCCG CGACGATGCG CATCTGGGTG AGCTGGCGCA GGCGGGCGCG
GCACATGTCT TTCCCGAAAA CTATGCTGCG GGGCTTGGGC TCGGCGCTCA GGCCCTGATG
ACGCTCGGCA TGTCTGCGGA CGATGCGACC GATAGGATCC GGGCTATGCG GGCGCAGCTC
AGTCCGGACC TTCAGATCGT GCCGCGGTGA
|
|---|
| Protein sequence | MEEQLAQTFL LIAAAFVAVA ILARLRLSPV LGYLAAGLLL GPHGIGAVTD SEGTHFFGEL
GIALLMFVIG LEFSVPRLLS SGGAMIGLGF GTVAGATLLA GAASHFLVGL PLLPAALLGG
AIAMSSTAII QKHLVDTDAV SSRHGVAATG IVLFEDLVAL ILLSLIAALP DAANEVEMEK
VLLRMGVSFV ALAGVALLAR RTLGRLLGWV ARSGPDETFL LGVLTLVVGA SLAAEKIGLS
LPIGAFVVGM MVGESDFRHQ LEEEIRPFRD LLLGVFFVTI GMSVDWSQIL AQPAVTFLVL
AAILVVKFLV VFGVTRLSGL PASSAVKTGL LLAHSGELGL LIVGRSLDSA LLSPAIGQPV
LGAIAASMLV GPILAQWSDR AGDLILRSRD PRGAEIETAV RTTSQELKGH VVLAGCGPVG
RLVALTLEAS EIPYLAIERN VERLRRAQQD GHKAVFGDAS RAGILKAAGV DRAAAIIVLV
NNWHRSVRII REAKRLNPAI HVIASLRDDA HLGELAQAGA AHVFPENYAA GLGLGAQALM
TLGMSADDAT DRIRAMRAQL SPDLQIVPR
|
|---|
| |