| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5213 |
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| Symbol | |
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| ID | 5195680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | + |
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| Start bp | 101909 |
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| End bp | 104350 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640579141 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001260089 |
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| Protein GI | 148550650 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000504339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.176333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCCCT TTCTCTTTTG CCTGCGCGAT CAACATGACG CGCCCTTGGT CATCCTCGCG
GCTATAGTCT GTCTCCTGAC GGCGGCAGCA ACCGTTCGCC TGTGTCGCCA GGCGGCCTGG
ACAGACACGG GTTCGCGCAG CTTGTGGCTG ACGATGGCGG GGTTGACTGC CGGTCTTGGG
ATCTGGGCCA CGCACTTCAT CGCGATGCTG GGCTACGATC CCGGCATCGT CATGGGCTAT
CATGTCCAAC AGACCGTGGT CTCGCTCTTG GTCGTGCTGG CAGGCGCGAC AGCGGGCCTC
TTCATTGCGA CACGCGCGCC GCACTGGCTC GGCTCGCTTC TTGCCGCTTC GGTTATGGGC
GGCGGCGTCA CGGCCATGCA CTACCTTGGC ATGGCGGCGC TCGAAATGCC TGCGCTCATT
CGCTGGAAGG CCGATTATGT CGCGGCCTCG GCCGTGTTCG CAATCGTCCC GCTAGTCTTG
GCGCTGCCCC TTGCGCTGCG CGGCAGATCG CTCGCCAAAG GCGCAGCGGC CGCTGGTCTG
ATCACCGCCG CCGTCGTCCT GCTTCACTTT ACCGGCATGA CCGCGATCAC GCTGATCCCG
TCGCGTGGCG AATTCTCCCC CCTCAGCATG ATGTCTCCCC GCGCCATGTC GCTCTGGATA
TTTCTCGCGG CCTCCTGCAC GATCGCTCTG ACCGCGGCGG CGGCGATCAC GAGCCGGCGG
ACGGGCATCA AATTGCGCCG ACAGGAACGC GAGAATCAGC TTCGCGTCCA AGGCATGAAG
GCCCAACTCG ACCTAGCCCT TGAGAATATG CACCAGGGCC TGTGCCTATA CGACGGCGAC
GGTCGGCTTT TGCTCTGGAA CCAGCGTTTC CTGGATCTAT ACGGGCTTGG AAGCGATGCG
CTCCAATGCG GAATGACGGT GGGACAAGTG ATCCGCACCG GCATTGCCAA CCATCTTCCC
GTTACCGAGG TCGAGCAGCG CGCAGCAGAA ATCGAGCGTA ACCTCAACCA GGCCCTGAGC
GCTTCAGGAG ACGCACCCGC AATCTCGGAA TATCCCGGCG TGGTGGTGAG CGTACGTTCG
CGCGCGCTTC CCGACGGCGG ATGGGTGAGC ACCTTTGACG ATATTACCCA GCAGCGCCGT
TCGGAAGAAC GAATCCGGCA CCTGGCGCTG CATGATGGCC TGACCGGCCT GCCCAACCGG
CGTAGGTTCA ACGATGTCGT CGACCGCGAT CTGGACGTTA CGGCGCGAGC CGGTTCGCGC
CTGGGACTGG TCGTTGTCGA CCTCGACAAT TTCAAGGACA TCAACGACAG CCGCGGCCAT
TCAGCCGGAG ACCAAGCATT GAAGATGGTC GCCGCAGCGC TCAAGGACGC GGTTCGCGAG
AATGAACATG TCGCCCGGCT GGGTGGCGAC GAATTCGCCG CCGCAATTCT GTACCGGGAA
GATTATGAGC TTGCCGACTT TGTGACGCGC CTGAGCACCG GGCTGGCGGC GATCAATGCC
GGCAATGCGC ACGATCTGAG CGTCCATGCG AGCCTTGGCA TCGCAACCTA TCCGGCTGAC
AGCCAGGATC GCGAACAGCT GTGCAATCAT GCCGATCTGG CCATGTACCG GGCAAAAGGG
ACGGTAGGCG AGCGGATCTG CTATTACGAA AAAGGCATGG ACGAGCAGGC GCGCGAACGC
CGGCAACTCG CGGCCGATCT TCGGGGCGCC GCCGCGCGCG GTGAGATGAC GATCCTCTAC
CAGCCGCAGC GTTCGCTCAA GGACGACAGG GTAAACGGCT ATGAAGCTCT GCTGCGCTGG
ACCCACCCAA AGCGCGGCCT GGTCCCCCCT GACATCTTCA TTCCCGTTGC TGAAGAAACC
GGCGAGATCT TGGCGCTTGG CGAGTGGGTG CTGCGGCAAG CCTGTGAGGA GGCGGCCCGC
TGGGGTGACG GACTGACCGT GGCCATCAAC CTCTCCGCCG TGCAGTTGAG CCAGGCGAGC
CTGCCCGAGA GCGTGGCCCA GACCCTTCTG GAGACCGGAC TCGCACCAAG GCGTCTCGAA
CTGGAGATCA CTGAAACCGC GATCATCGCC GACAAGCCGC GCGCCTTGCA TATTTTGCGT
AGACTCAAGG CGATGGGGAT CGCCATTGCC ATCGACGATT TCGGCACCGG CTATTCCTCG
CTCGATACGC TCAACTCGTT CCCCTTCGAC AAGATCAAGA TCGACAAATC ATTCGTCATC
GGGTCCGAAG AGCGGCCGCA GGCCAGAGCA ATCATCAGGG CGGTGCTCGC GCTGGGCCAC
AGCCTTGGCG TCCCTGTGCT CGCCGAAGGG GTTGAGACCA GTGGGCACGT CGATCTGCTG
GTGGCTGAGG GATGCGACCA GGTCCAAGGC TATCTCTTCG GACGCCCCGG CCATGCACCA
AGCCTTCTTG CGAGGGAGCA GGCCCGACTG GCCGCCGGTT GA
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| Protein sequence | MFPFLFCLRD QHDAPLVILA AIVCLLTAAA TVRLCRQAAW TDTGSRSLWL TMAGLTAGLG
IWATHFIAML GYDPGIVMGY HVQQTVVSLL VVLAGATAGL FIATRAPHWL GSLLAASVMG
GGVTAMHYLG MAALEMPALI RWKADYVAAS AVFAIVPLVL ALPLALRGRS LAKGAAAAGL
ITAAVVLLHF TGMTAITLIP SRGEFSPLSM MSPRAMSLWI FLAASCTIAL TAAAAITSRR
TGIKLRRQER ENQLRVQGMK AQLDLALENM HQGLCLYDGD GRLLLWNQRF LDLYGLGSDA
LQCGMTVGQV IRTGIANHLP VTEVEQRAAE IERNLNQALS ASGDAPAISE YPGVVVSVRS
RALPDGGWVS TFDDITQQRR SEERIRHLAL HDGLTGLPNR RRFNDVVDRD LDVTARAGSR
LGLVVVDLDN FKDINDSRGH SAGDQALKMV AAALKDAVRE NEHVARLGGD EFAAAILYRE
DYELADFVTR LSTGLAAINA GNAHDLSVHA SLGIATYPAD SQDREQLCNH ADLAMYRAKG
TVGERICYYE KGMDEQARER RQLAADLRGA AARGEMTILY QPQRSLKDDR VNGYEALLRW
THPKRGLVPP DIFIPVAEET GEILALGEWV LRQACEEAAR WGDGLTVAIN LSAVQLSQAS
LPESVAQTLL ETGLAPRRLE LEITETAIIA DKPRALHILR RLKAMGIAIA IDDFGTGYSS
LDTLNSFPFD KIKIDKSFVI GSEERPQARA IIRAVLALGH SLGVPVLAEG VETSGHVDLL
VAEGCDQVQG YLFGRPGHAP SLLAREQARL AAG
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