| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5159 |
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| Symbol | |
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| ID | 5195637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | - |
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| Start bp | 50996 |
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| End bp | 54040 |
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| Gene Length | 3045 bp |
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| Protein Length | 1014 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640579089 |
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| Product | conjugative relaxase region-like protein |
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| Protein accession | YP_001260037 |
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| Protein GI | 148550598 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.734563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTCGG TCGCCGGCGT CCGCTCCGCT TCCGGTGCCG CGAACTATTT CGCGAAGGAC
GACTATTACA CGGTCGAGGG CTCGTCCGAG ATCAGCGCCT GGGGAGGGGA GGGCGCCGAG
GCGATCGGCC TGTCCGGAGA AGTCTCGAAG GACGCCTTCG AGGGCGTGCT GAACGGTATC
CTCCCAAGCG GCGAAGCGGT CGCCCAGGTC GAGAACCGGC GCGCCGGCTA CGACCTCACC
TTCTCCATGC CGAAGTCGGC TTCGGTCATG GCCTATGTCG CCGGCGACAA GCGCGTGCTT
GACGCCAATA TGGCCGCGGT CAAGGCGACC ATGGCCTGGG TCGAGAAGAA CCTCGCGGAA
GGGCGTCGCG ACATCGAGGG GCGCAAGGTC CCGGTCCAGA CGGGCAATCT CGTCTACGCG
CTCTTCCAGC ACGACACGAG CCGGGCGCTC GATCCGCAGG CCCACATCCA CGCCGTCATC
GCCAACCTCA CCCGCATGCC CGATGGCAAA TGGCAGGCAC TCCACGCCGA CAAACTCTGG
AGCCACAACA GCATCATCGG CTCGATCTAC CATGCTTTCC TGCGCGCCGG GCTCGAGCGG
ATCGGCTATC AGGTGGACCT CAAGGGCAAG CATGGCACCT TTGAGATTGC CGGCGTTCCC
AAGGCGGTCA TCGGCGAATT CAGCCAGCGC CGCGAGGAGA TCCTCGATCA CGCAACGCGG
CTCGGCATCA AGTCGCCGGA GGGCCTGCGC GAAATCACCA AACGCTCGCG CGATCCCAAG
CTCGACGTCG AGGACCGCGC CGCGCTGAAG CAGGGCTGGA TCGACCAGGC CGCTGCCCAC
GGCTTCGACG GCAAGGACCT GCGGGCAGCA GCCGAGGCGC GCGCCGGGAT GGCGTCTTCG
GAAAATGCTC TCGAGCGCGG CTACCGCGCC ATTGTCGATG CCGTAACTGG TGCCCGCCAG
ACGCTGGGTG CGCTGCTCCG CCCCCAGGAC CCTTTAGTGG ACAATGCGCT CGCCCGCGCG
GTCAAGTCGC CAGCGGAAGC GCGCGCGCAG CTCGCGGTCG CGTCCGCCGT CCGGATCCTC
TCCGAACGTG AGGCCGCATG GCCCGTCAAT CTGCTCGGCA AGACCGCGCT CGATCTCGGT
CTCAAGGGCG TCACCGTCGA CCTGATCGAG AGGCGGATCG ACCGGCTCGT GCAGAACCGT
CAGCTCATCC CGGGCGTCGC GACAGCCGCG GACCGGACTG GCCGCATGGT GACCACGCAG
GAGGCGCTGC GGACCGAAGA GAAGATTCTT GCCGCCGTCG AGGAGGGGAA AGGGAAGTCC
GAGCCAATTG TGGCGGCCGC CGATGCGCCG CAGCGATTGC AGGATGCCGC CGAACGGCCG
CTCAATCCTG GGCAGCTCGC CGCCGCGACG ATGATCCTGT CATCCGCCGA TCGTACCGTC
TCGGTGCAGG GCGCCGCCGG CACGGGCAAG TCCACCATGC TCCAGGCGGT CGCGCGGGTC
GCCGAGGAGG AGGGCGCCCG GATCACCGGA CTTGCCTTCC AGAACAAGAT GGTCGCGGAC
CTCGCCGAAG GGGCGGGCAT CAAGGCCCAG ACGATCGCTT CCTTCGTGCT CGCCAACGAG
CGGTTCGTGA CCGAGCGTGA CACGCTGGGA TATGAGGCTG CGCGCGAGAA GCTCGCCGGT
ACCATGCTTC TCGTCGACGA AACCTCGATG GTGTCGTCGA ACGAAATGCT CAAGCTCCAC
CAGATCACAG CAGCCTTGGG CGTCGACAAG CTCGTTCTGG TCGGTGACCG GCAGCAGCTC
TCTTCGATCG ACGCGGGCAA GGCCTTCGCC ATGATCCAGG CGGGCGGCGG CACGATGGCG
CGGATGGATC AGAATATCCG CCAACGCACC GACCAACTGC GCACCGTCGC GGCGCTCGCC
AATATCGGCA AGGCCGGCGC GGCGCTGAAA GTGCTGGGGG ACCGTGTCGT CGAGGCGGGG
GAGCCGGCCG CCGCTGCGGC CGACATGTGG CTCGAGCTCT CCCCTGGCGA ACGGGAGGCG
ACCGCTGTCT TCGCTTCGGG CCGCGACGCG CGCGCCGTCA TCAACCAGCG CATCCAAGAT
GGCCTGATCG CGGAAGGGAG CGTCAAGGGC CAGGCGATCC ATCTCACTGT CTTTGAGCGG
GTCAACACCA CGCGCGAGGA GCTGCGCTAT GCCTCGACCT ACCGTCAGGG CCAGACGCTC
GAGGTCGGCC GCGGCGGCGC GCAGGACGTC GGGATCAAGG CGGGACGCTA CGACGTCCTC
AAGGTCCACG CCAACGGGAA GGTCGAACTG TCGGACGGTC GGCGCAGGAT ACGCTTCGAT
CCCCAGAAGC TGTCGCCGAC CGAGCAGCGC GATCGCCTGC AGCTTTCTGA AAAGAAGGAC
CTTCAGCTGC GCGAAGGGGA CCGCATCCGC TGGACGGCCA ACGACAAGCA GCGCGGCCTG
CACAATGCCG CGCTTGCGCG CGTTGTGGGC GTCGATGCCG ATGGCGTGAA GGTTGAGACT
GCGGACAAGG TGCTCCTCAC GCTCAGCCTC GGTGACCCGA TGCTATCTCG GCTCGACCTT
GCTTATAGCC TTAATATGCA CATGGCCCAG GGGATCACCA CCGACAAGGC GATCACCGTC
ATGTCGTCGC ATGAGCGCAA CCTCTCGAAC CAGCGCCTCT TCAACGTCGG GGTCACGCGC
GTGCGCGACG AGCTGACAAT GGTCGTGGAC GACAAGGAGA AGCTCGCGCG GCAGCTCGAC
ATGAATCCCG GCAACAAGAC CTCCTCGCTC GAGACGCTCG GCCGCCTCGA TATCGACGGC
AGGAAGGGGC CGGGCGCGCA ACCCCGCGAG AAGTTCGATC CCGGTCCGAT CGACGGCGTC
AACCTGTCCG ATCTTGCTCC CGTTCCAAGC GATCTGCCGC CTCTGCCCGA TGGCGCGGCA
TCTGCGCCGG CCGCGAAGGC CCCACAAGCG CCGCCCGATC TGAAACCCGA TCGCGGCGAT
CCGCTGCCAC CGCTGCCCGA GCGCAGCCTC GGGCTCGACT TGTGA
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| Protein sequence | MLSVAGVRSA SGAANYFAKD DYYTVEGSSE ISAWGGEGAE AIGLSGEVSK DAFEGVLNGI
LPSGEAVAQV ENRRAGYDLT FSMPKSASVM AYVAGDKRVL DANMAAVKAT MAWVEKNLAE
GRRDIEGRKV PVQTGNLVYA LFQHDTSRAL DPQAHIHAVI ANLTRMPDGK WQALHADKLW
SHNSIIGSIY HAFLRAGLER IGYQVDLKGK HGTFEIAGVP KAVIGEFSQR REEILDHATR
LGIKSPEGLR EITKRSRDPK LDVEDRAALK QGWIDQAAAH GFDGKDLRAA AEARAGMASS
ENALERGYRA IVDAVTGARQ TLGALLRPQD PLVDNALARA VKSPAEARAQ LAVASAVRIL
SEREAAWPVN LLGKTALDLG LKGVTVDLIE RRIDRLVQNR QLIPGVATAA DRTGRMVTTQ
EALRTEEKIL AAVEEGKGKS EPIVAAADAP QRLQDAAERP LNPGQLAAAT MILSSADRTV
SVQGAAGTGK STMLQAVARV AEEEGARITG LAFQNKMVAD LAEGAGIKAQ TIASFVLANE
RFVTERDTLG YEAAREKLAG TMLLVDETSM VSSNEMLKLH QITAALGVDK LVLVGDRQQL
SSIDAGKAFA MIQAGGGTMA RMDQNIRQRT DQLRTVAALA NIGKAGAALK VLGDRVVEAG
EPAAAAADMW LELSPGEREA TAVFASGRDA RAVINQRIQD GLIAEGSVKG QAIHLTVFER
VNTTREELRY ASTYRQGQTL EVGRGGAQDV GIKAGRYDVL KVHANGKVEL SDGRRRIRFD
PQKLSPTEQR DRLQLSEKKD LQLREGDRIR WTANDKQRGL HNAALARVVG VDADGVKVET
ADKVLLTLSL GDPMLSRLDL AYSLNMHMAQ GITTDKAITV MSSHERNLSN QRLFNVGVTR
VRDELTMVVD DKEKLARQLD MNPGNKTSSL ETLGRLDIDG RKGPGAQPRE KFDPGPIDGV
NLSDLAPVPS DLPPLPDGAA SAPAAKAPQA PPDLKPDRGD PLPPLPERSL GLDL
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