| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5136 |
|---|
| Symbol | |
|---|
| ID | 5195745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | - |
|---|
| Start bp | 27643 |
|---|
| End bp | 29772 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 709 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640579066 |
|---|
| Product | Pyrrolo-quinoline quinone |
|---|
| Protein accession | YP_001260014 |
|---|
| Protein GI | 148550575 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.388908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.506379 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTTG TGGGGGCGGG CTTCCTCTTG CTGGGTACGA CACTGAGTGG TTGCTCGCGG
TCGAACGAAG CGAGCAACCG GGCACCCGTC GATACCTCGA AAATCGCCGG GAAAATTAAC
GGTGACTTTA TTGTCAAGAA CGCTGCGACT TCCGAGGAAT GGCCCAGCTA CGGCCTCGAC
TATTCGGAAA CGCGCTTCAG CAAGCTGTCC CAGATATCCA CTGACAATGT CGCCCGACTG
GGTTTGGCCT GGACCTATGA TCTGGGCTCG ACCCGCGGCG TAGAGGCAAC GCCGCTTGTT
GTGGACGGGA TCATGTACGT GACAGCATCC TGGAGCGTCG TGCATGCAAT CAATGTACGG
ACGGGGAAGC AGTTGTGGAC GTTCGATCCG CAAGTGCCGC GCAGCGCGGG CGGCAAGGGG
TGCTGTGACG TCGTGAACCG GGGCGTGGCC GTCTATGAGG GAAAAGTCTT CGTCGGAGCC
TTCGATGGTC GTCTCATCGC GCTTGATGCG GCGTCCGGCG CCAAATTGTG GGAAGAGGAC
ACCAGACTAT CGCCGGACTC GCCAGCCACC ATCACCGGCG CGCCGCGTGT GTACAAGGGC
AAGGTCATCA TTGGTAACGG TGGCGCGGAG CTGGGGTTGC GTGGCTATAT CACCGCCTAT
GATGCGTCGT CGGGCAAGAA GCTCTGGCGC TGGTTCACGG TCCCGGGAGA TCCATCGAAG
CCGTTTGAGA ACAAGGCGAT GGAAGCCGCC GCCAAGACCT GGGACCCCAG CGGACGCTAT
TGGGAGGCGG GCGGTGGCGG CACCGTCTGG AACAGCATGG CGTTCGATCC GCAGCTCAAT
CTCATGTATA TCGGCGTCGG AAACGGGGCG CCTTGGTCGC GCAATCGCCG CAGTCCCAAG
GGCGGCGACA ATCTCTATCT CGGATCGATC GTCGCGCTCA ATCCTGATAC CGGCGAATAT
GTCTGGCACT ATCAGGAGAC GCCGGGGGAC AACTGGGATT ACACGTCGAC GCAGGATATG
ATCCTGGCCG ACATGACGGT CGACGGCGCG CCGCGCAAAG TGATCCTGCA TGCGCCCAAG
AACGGCTTCT TCTTCGTCAT CGATCGGACA AACGGCAAAT TCATCTCCGC GAAGAATTTC
GTGCCGGTGA ACTGGGCCTC GGGCTATGAC AAGGCGGGCA GGCCTATCGA ATTGCCCGGC
GTCCGCTCGG CCACGCCCTA TGAGATCATT CCCGGTCCTT TTGGCGGGCA CAACTGGCAT
TCCATGTCGT TCAATCCGGC TTTGGGGCTG GCGTTCATTC CCGCGCAGCA TGTGCCGCTT
TCGCTGGCGG ACGATCCGAA ATGGAAATAT CGCTCCAACA TTCCAGGCCA GCCCATGAGC
GGCATCGGTT GGAACACAGG CAGTTTGCTG GGAGGCGCGG CGACGAAGGC CAAACCCTTC
GGTCGCCTGA TCGCATGGGA CCCGGTGCGC CAGAAGCAAG TCTGGAGTCA GGAACAAGTT
TCGCCGTGGA ATGGTGGCAC GCTGACCACA GCGGGGAATC TGGTGTTCCA AGGAACCGCA
GATGGGCATT TCGTAGCCTA TGATGCGCGC AACGGCCATA AAATGTGGGA GTCGCCGGTA
GGCAGTGGCG TCATCGCGGC TCCGATCACC TACCAGATCG ATGGCAAGCA GTATGTCTCG
ATTGCGGTGG GTTGGGGCGG TGTTTTCGGT GAGTCCCAGC GCGCTACCGA CCGCAGTTCG
CCTGGTACGG TCTACACCTT CGTCATCGGC GGCAAGGCGC CGTTGCCGCA GTTCGGAAAA
TATGAGCAGG GGGAACTGCT CTCGGGCGTG CCCTATGACA AGAAGGACGT CGCTCCTGGA
GGCGCACTCT ACGTCAGCAA CTGTCTGTTC TGCCATGGCG TTCCTGGCGT CGACAAGGGA
GGCAATTTGC CCAACCTGGG TTATGCGCCC CGCGAGGCGA TCGCCAATCT TGAAGCGTTC
GTTTTCGAAG GTGCGATGGC CGAGCAGGGT ATGCCCGATT TCAAGGGCAA GCTTACCGCA
GAGGACGTCA AGAAGCTCAA GGCGTTCATT CAAGGCACTG CAGATTCTGT GCGCGGACAA
CCTGCCGCGA GCGCAAAACC GAAAAAATAG
|
|---|
| Protein sequence | MALVGAGFLL LGTTLSGCSR SNEASNRAPV DTSKIAGKIN GDFIVKNAAT SEEWPSYGLD
YSETRFSKLS QISTDNVARL GLAWTYDLGS TRGVEATPLV VDGIMYVTAS WSVVHAINVR
TGKQLWTFDP QVPRSAGGKG CCDVVNRGVA VYEGKVFVGA FDGRLIALDA ASGAKLWEED
TRLSPDSPAT ITGAPRVYKG KVIIGNGGAE LGLRGYITAY DASSGKKLWR WFTVPGDPSK
PFENKAMEAA AKTWDPSGRY WEAGGGGTVW NSMAFDPQLN LMYIGVGNGA PWSRNRRSPK
GGDNLYLGSI VALNPDTGEY VWHYQETPGD NWDYTSTQDM ILADMTVDGA PRKVILHAPK
NGFFFVIDRT NGKFISAKNF VPVNWASGYD KAGRPIELPG VRSATPYEII PGPFGGHNWH
SMSFNPALGL AFIPAQHVPL SLADDPKWKY RSNIPGQPMS GIGWNTGSLL GGAATKAKPF
GRLIAWDPVR QKQVWSQEQV SPWNGGTLTT AGNLVFQGTA DGHFVAYDAR NGHKMWESPV
GSGVIAAPIT YQIDGKQYVS IAVGWGGVFG ESQRATDRSS PGTVYTFVIG GKAPLPQFGK
YEQGELLSGV PYDKKDVAPG GALYVSNCLF CHGVPGVDKG GNLPNLGYAP REAIANLEAF
VFEGAMAEQG MPDFKGKLTA EDVKKLKAFI QGTADSVRGQ PAASAKPKK
|
|---|
| |