Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1788 |
Symbol | |
ID | 5171506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1798642 |
End bp | 1799268 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640564309 |
Product | LemA family protein |
Protein accession | YP_001245364 |
Protein GI | 148270904 |
COG category | [S] Function unknown |
COG ID | [COG1704] Uncharacterized conserved protein |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00000175947 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGAAATT CCAACAACAT AAAATTCCAT GATAACATGT TAAAAGTGGA AGGAGGGATT TCTGTGAAAA AAGGCCTCAT CGTTCTGATA ATCGTTCTGA TCGTAGTGGT CATCATCATC GGCACCACGA TAGGATACTA CAACTACCTT GTTTCGCTGG AACAGGAAGT GAAGGAAAAG TACAGCCAGA TTCAGAACCA GCTTCAAAGG AGAGCAGATC TCATACCCAA CCTCGTGGAA ACGGTGAAGG GATATGCTGC ACACGAGAAA GAGATTCTCG AAGAGATAGC GAATGCAAGA GCGAAACTGA TAGGTGCAAG AACACCACAG GAGAGCGCCC AGGCTGATGC AGAGCTTTCT TCAGCCCTCT CAAGACTTCT TGCCATAGCG GAAAACTATC CCAATCTCAA GGCTGACGCG AACTTTCGCC AGCTCATGGA TGAACTCGCC GGAACGGAAA ACAGGATCGC AGTCGCTCGA AGAGACTACA ACGAAGCAGT GAAAAGGTAC AACACCGCTA TAAAGAGGTT CCCCGGTGTG ATCTTTGCAA GGATGTTCGG ATTCGAAGAG AAACAGTACT TTGAAGCAAA AGCCGGAGCA GAGCAGGTGC CAGAGGTGAA GTTCTGA
|
Protein sequence | MRNSNNIKFH DNMLKVEGGI SVKKGLIVLI IVLIVVVIII GTTIGYYNYL VSLEQEVKEK YSQIQNQLQR RADLIPNLVE TVKGYAAHEK EILEEIANAR AKLIGARTPQ ESAQADAELS SALSRLLAIA ENYPNLKADA NFRQLMDELA GTENRIAVAR RDYNEAVKRY NTAIKRFPGV IFARMFGFEE KQYFEAKAGA EQVPEVKF
|
| |