| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1780 |
|---|
| Symbol | |
|---|
| ID | 5170248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1789320 |
|---|
| End bp | 1790090 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640564301 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001245356 |
|---|
| Protein GI | 148270896 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000232909 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTTCCG TGGAGGAGTA CCTGGAATAT CTCAGGGTAG TGAAGAAAAG AAGCGAAAGA
ACACTGTACC AGTATCGCTC CATTTTGAAG GAATTCGCCG AGTACGAACC CGTCACCCTT
GATTCCTGGA GGGAATATCT ACACAGAATA TCAAGCAACG CTCCCACCAC CCAGCGTAAC
AAACTCGTTG TGGTGAAAAA CTACCTGAAC TGGAAAGCAG ACAGAGGAAT TCTGAACGTG
AAGGATCGCT TCTGGAACGA AGCCGAACCC CCTCGCTACG CGGTACTGCC GAAAGCCGTG
GAACTCGAGG AAATCAAGCG CATCATCGAA GCATGTGATC ATCGAATGTA TAAGGCGATC
TTCAAAGTGC TCGCCAACAC GGGAATGAGG GTCTCAGAAC TTGTGGGTCT TTCAATACAG
GACATCTCAC TGAACGATAC CGCCAGAATA CGAATAAAAG GAAAAGGCAA CAAAGAAAGA
ATCATCAACG TTTCCAGAGA TCTGGTGGAA GAACTCGTGA GATCTGGTTT CTTCGAGAAA
AAGCCCTCTG TTCGCTCGAT ACAGAGGGCC GTCAAACGAT ACGCCAGAAA GGCTGGAATA
AGAAAAAAGG TGACACCACA CATTTTCAGA CATTCCTTCG CTGTTGCTTT GATAGAGCGA
GGAATTCCCC TGAACAAGAT ACAGGCCCTT CTTGGTCACG CCAACATTTC AACCACTTCC
ATATATCTAA AAATAGCAAG CGAAGGGGTT GAGGTGCCGA AGATTATTTG A
|
|---|
| Protein sequence | MISVEEYLEY LRVVKKRSER TLYQYRSILK EFAEYEPVTL DSWREYLHRI SSNAPTTQRN
KLVVVKNYLN WKADRGILNV KDRFWNEAEP PRYAVLPKAV ELEEIKRIIE ACDHRMYKAI
FKVLANTGMR VSELVGLSIQ DISLNDTARI RIKGKGNKER IINVSRDLVE ELVRSGFFEK
KPSVRSIQRA VKRYARKAGI RKKVTPHIFR HSFAVALIER GIPLNKIQAL LGHANISTTS
IYLKIASEGV EVPKII
|
|---|
| |