| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1744 |
|---|
| Symbol | |
|---|
| ID | 5170076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1741719 |
|---|
| End bp | 1742618 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640564267 |
|---|
| Product | AraC-like transcriptional regulator |
|---|
| Protein accession | YP_001245322 |
|---|
| Protein GI | 148270862 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00012602 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAAT TCGATCACAC TCGGAGAAAG CTGATTGAAA GGATTTTACA TCTCACAGAA
AAACAACCCG TGGTGAGACC ACTTCCGGGT CTGACTGTGG GCAGGAGGGA GTCTCCTACA
GAACCTTCCA CTTACATTCT TCCGCCATCG ATATGCATCG CAGTTCAAGG TGCAAAGCGC
GTTCTTATCG GAGAAGAGTA CTACGTTTAT GACGTGGAGA ATTTTCTTCT CAACTCTTTC
GACATTCCCG TGATTGCCCA GGTGATAGAA GCTTCTAAGG AAAAACCTTA TATCGGAATA
ACCTGGGAGA TAGACATGGA GATCCTCATG GAGATCGTTG TTGAGCAAAA GCTCAATACA
AGACCCATCG CGTCATCCCG CGGTACATCG CTGGGGAAGG TCACTTACCA GCTCTTAGAC
GCTTTCAAAA GGATGCTGGA TCTCCTTGAT GAACCGGAAC ACATTTCCGC ACTCCTTCCC
GTGATAAAAA AAGAGATCAT CTACAGGCTC CTTGTGAGCG AACAGGGATC AAAACTCATC
CAGATTGCGC TCTCTGGAAA GAACGATGTG ATAGCAGCAT TGAATTATCT GAAAGAACAC
TTCAGCGAAC CCGTGAACAT GAAAAAGCTT GCCGAGATGG TGGGAATGAG CGTTTCGACT
TTTTATCAGA ACTTCAAGAC TCTCACCGGC ATGACTCCCC TTCAGTATCA GAAGAAACTC
CGGTTGTGCG AGGCAAGGAA GCTTCTCATG GCAGGTCATG ACGTTACAAC CGCAGCCTAC
CAGGTGGGAT ACGAGAGCCT CTCTCAGTTC AGCAGGGAGT ACAAAAGATT CTTCGGTGTT
TCTCCTTCAC AGGATGCAAA GAGATTGAGG AACAGTAATT TAATGGATGT GGTTCACTGA
|
|---|
| Protein sequence | MDEFDHTRRK LIERILHLTE KQPVVRPLPG LTVGRRESPT EPSTYILPPS ICIAVQGAKR
VLIGEEYYVY DVENFLLNSF DIPVIAQVIE ASKEKPYIGI TWEIDMEILM EIVVEQKLNT
RPIASSRGTS LGKVTYQLLD AFKRMLDLLD EPEHISALLP VIKKEIIYRL LVSEQGSKLI
QIALSGKNDV IAALNYLKEH FSEPVNMKKL AEMVGMSVST FYQNFKTLTG MTPLQYQKKL
RLCEARKLLM AGHDVTTAAY QVGYESLSQF SREYKRFFGV SPSQDAKRLR NSNLMDVVH
|
|---|
| |