Gene Tpet_1687 details

Gene Information

• Locus tag: Tpet_1687
• ID: 5170690
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1686824
• End bp: 1688818
• Gene Length: 1995 bp
• Protein Length: 664 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640564213
• Product: extracellular solute-binding protein
• Protein accession: YP_001245268
• Protein GI: 148270808
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0747] ABC-type dipeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.789812
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATTAC CTCAAAATTT CCGTGGAGGT GGTAGGATGA AGCGTTTTCT GGTGTTTCTT 
GTGGTTTTGC TCACTTTAAC AGCGGTTTTT GCAACAGAGT TGCCTCCTCT CACACAGTAC 
AACCTTTCAG ACTTTGAAAA ACTCACCGGC AAGAAGATCA CTCAGTTCAA CGAAGCTCCG 
ATTCTGAACG AACAGGTAAA GCAGGGCAAG TTACCCCCTG TAGAAGAACG ACTGCCGGAA 
GATCCCGTTG TTCTCATTCC GTGGGAAAGC ACAGGAAAGT ACGGAGGAAC ATGGAACAGA 
GCCTGGACAG GACCTGCCGA CAGACCACAG GCCGACAGGT TCATGCTCGA ATCTGCAATG 
GTGTTTGATC CCCAGGGTAA GGAGCTCTAT CCGAACATCC TTGAGAAGAT CGAAATGTCT 
TCCGATGGAA AAGAATTCAT CTGCACTCTC CGAAAAGGTT TGAAATGGTC TGATGGAGTT 
CCTGTTACCA CAGAAGATGT GAGATTCTGG TACGAAGATG TCCTTCTCAA CGAGGAACTC 
GTTCCTACAT TCCCAAGAGA TCTCATGGCT GGCGGCAAAC CTATGAAACT CGAAATCATA 
GACGAATACA CCTACAAGAT CACTTTTGAA GAACCTTATC CTCTCTTCCT GTACCTGTAC 
GCAACGAGAA AGGGAAGCTG GGGAATCCGT GGAATCATGC TTCCAGCGCA TTACCTGAAA 
CAATTCCATC CAAAGTACGT GCCGCTGGAA AAAATCCAGA AGATGGCAGA AGAAAATGGG 
TACGACAACT GGACGAACTA CTTCTGGTCT CTCGGTGATC ACAACGCTCA CATCTCCAAT 
CCCGATCTTC CCGTGCTAGC TGCTTGGAAG TTGAAAGAAA TCACGGATGC AAAACTCGTA 
ATAGAAAGGA ACCCGTACTA CTGGAAGATA GATCCCGAAG GGAATCAGCT TCCTTATATC 
GATGAGATCG TATTCTGGAC CGTCCAGGAT AGACAGATGA TACTTCTGAA AGTCATGGCA 
GGAGAAATCG ATATGCAAGC AAGACACCTG AGTCTGGAAG ACTACACACT CCTTGCCGCT 
AACGCACAGA AGGGTGGTTA CAAAATCATC AAGTGGAAAC TTGCACGCGG AAGTGATGTT 
ACACTCTGGT TGAATCAAAA CGTCAAAGAT CCTGTTCTCA GAGAACTCTT CCAGAACATC 
AAATTCAGAC AGGCACTCTC ACTTGCCATC AATCGTGAAG AGATAAACTC CCTTGTCTAT 
TACGGTCTCT GTGAACCGAG ACAGGCATCG TTTGTGAGCG GTGTTAAATT CTACGATCCT 
GAATGGGAAA CAAGATTCGC CGAATACGAC CCTGAGACTG CAAATAAACT TCTGGATGAA 
ATAGGCCTTA CAAAACGCAA CGCAGAAGGT TACAGATTGA GACCGGACGG TCAACCACTG 
ATCCTGACGA TCGAATATCC CACGGGTATC TTCGGTGCAT GGGACAAAAC ACTCGAGATG 
ATAGCTCAAT ACTTCCAAAA AATCGGGATA AAGGTCAATC TGAAACCAGA GGAGAGATCA 
CTGTACATAA CAAGATGTAA CGGTGGTGAG CCTGAAATAG GCGTCTGGTT CTTTGACAGA 
AACAAGTATC CAATGCTCGA TCCCGGAAGG CTTCTTGGAA CGGTAACCGA TGGGCCATGG 
GCACCACTCT ACGGTCAGTG GTACACTTCG GGTGGAAAGG GTGGTGAAGA ACCACCCGAA 
GGATCCGACA TCAGAAGAAT ATACGAACTC TGGGAAAAGG TCAAAATGAC AGTCGATGAG 
AAAGAAAGAG ACAAACTCTT CAGAGAAGTC ATAAATGTTC ACAAGAAAAA CATTTTCTTC 
ATAGGAACAG TTGGAGAACC AATCTGGCCG GTTGTTGTGA AGACTTATTT CAAGAATGTA 
CCTGATTCAC CAGATTTTGT GTGGGAAAAC GAGGGTGATG GACAACACGC TGAACAGTAC 
TACATGGACA AATAG 

 

Protein sequence

MRLPQNFRGG GRMKRFLVFL VVLLTLTAVF ATELPPLTQY NLSDFEKLTG KKITQFNEAP 
ILNEQVKQGK LPPVEERLPE DPVVLIPWES TGKYGGTWNR AWTGPADRPQ ADRFMLESAM 
VFDPQGKELY PNILEKIEMS SDGKEFICTL RKGLKWSDGV PVTTEDVRFW YEDVLLNEEL 
VPTFPRDLMA GGKPMKLEII DEYTYKITFE EPYPLFLYLY ATRKGSWGIR GIMLPAHYLK 
QFHPKYVPLE KIQKMAEENG YDNWTNYFWS LGDHNAHISN PDLPVLAAWK LKEITDAKLV 
IERNPYYWKI DPEGNQLPYI DEIVFWTVQD RQMILLKVMA GEIDMQARHL SLEDYTLLAA 
NAQKGGYKII KWKLARGSDV TLWLNQNVKD PVLRELFQNI KFRQALSLAI NREEINSLVY 
YGLCEPRQAS FVSGVKFYDP EWETRFAEYD PETANKLLDE IGLTKRNAEG YRLRPDGQPL 
ILTIEYPTGI FGAWDKTLEM IAQYFQKIGI KVNLKPEERS LYITRCNGGE PEIGVWFFDR 
NKYPMLDPGR LLGTVTDGPW APLYGQWYTS GGKGGEEPPE GSDIRRIYEL WEKVKMTVDE 
KERDKLFREV INVHKKNIFF IGTVGEPIWP VVVKTYFKNV PDSPDFVWEN EGDGQHAEQY 
YMDK